3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00030

Details:

PFam ID : PF00030

PFam Domain Description : Beta/Gamma crystallin

Number of Sequence in 50% Dataset : 132

Number of Sequence in Full Dataset : 669

Average sequence length: 79.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00030	C9EI57_NOTVI_59_110	98.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00030	C3ZY18_BRAFL_3_97	100

Sequence based PCA Plot of the family - PF00030 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=23 Length=8
Motif2 Start=5 Length=17
Motif3 Start=87 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay