3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00029

Details:

PFam ID : PF00029

PFam Domain Description : Connexin

Number of Sequence in 50% Dataset : 31

Number of Sequence in Full Dataset : 177

Average sequence length: 97.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00029	Q4TCR0_TETNG_1_64	90

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00029	Q4RDJ0_TETNG_3_60	100

Sequence based PCA Plot of the family - PF00029 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=8
Motif2 Start=14 Length=28

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay