3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00027

Details:

PFam ID : PF00027

PFam Domain Description : Cyclic nucleotide-binding domain

Number of Sequence in 50% Dataset : 3383

Number of Sequence in Full Dataset : 9447

Average sequence length: 90.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00027	D4VZX2_ENTFC_34_77	84.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00027	A6EED5_9SPHI_46_90	99.6

Sequence based PCA Plot of the family - PF00027 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=35 Length=8
Motif2 Start=7 Length=8
Motif3 Start=20 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay