3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00026

Details:

PFam ID : PF00026

PFam Domain Description : Eukaryotic aspartyl protease

Number of Sequence in 50% Dataset : 951

Number of Sequence in Full Dataset : 2843

Average sequence length: 273.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00026	C5L4G7_9ALVE_1_77	90.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00026	Q4N7L7_THEPA_26_173	99.8

Sequence based PCA Plot of the family - PF00026 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=425 Length=11
Motif2 Start=412 Length=8
Motif3 Start=6 Length=8
Motif4 Start=17 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay