3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00025

Details:

PFam ID : PF00025

PFam Domain Description : ADP-ribosylation factor family

Number of Sequence in 50% Dataset : 286

Number of Sequence in Full Dataset : 1600

Average sequence length: 157.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00025	B3EDA7_CHLL2_436_552	81.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00025	A5K2K5_PLAVS_1_141	100

Sequence based PCA Plot of the family - PF00025 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=47 Length=8
Motif2 Start=125 Length=11
Motif3 Start=20 Length=8
Motif4 Start=3 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay