3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00023

Details:

PFam ID : PF00023

PFam Domain Description : Ankyrin repeat

Number of Sequence in 50% Dataset : 833

Number of Sequence in Full Dataset : 3907

Average sequence length: 32.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00023	Q7PZ46_ANOGA_43_77	74.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00023	C8VNE9_EMENI_416_457	79

Sequence based PCA Plot of the family - PF00023 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=25 Length=8
Motif2 Start=3 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay