3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00022

Details:

PFam ID : PF00022

PFam Domain Description : Actin

Number of Sequence in 50% Dataset : 639

Number of Sequence in Full Dataset : 2229

Average sequence length: 302.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00022	E2C8G0_9HYME_261_526	80.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00022	C9SAA6_VERA1_176_316	100

Sequence based PCA Plot of the family - PF00022 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=91 Length=8
Motif3 Start=52 Length=8
Motif4 Start=72 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay