3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00021

Details:

PFam ID : PF00021

PFam Domain Description : u-PAR/Ly-6 domain

Number of Sequence in 50% Dataset : 117

Number of Sequence in Full Dataset : 353

Average sequence length: 73.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00021	D2HNF8_AILME_142_220	83.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00021	Q1WCJ9_ICTPU_2_45	53

Sequence based PCA Plot of the family - PF00021 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=32 Length=8
Motif2 Start=8 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay