3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00020

Details:

PFam ID : PF00020

PFam Domain Description : TNFR/NGFR cysteine-rich region

Number of Sequence in 50% Dataset : 109

Number of Sequence in Full Dataset : 491

Average sequence length: 38.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00020	D2IGB9_SCHMA_103_142	87.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00020	A9UZP9_MONBE_797_839	95.5

Sequence based PCA Plot of the family - PF00020 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay