3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00019

Details:

PFam ID : PF00019

PFam Domain Description : Transforming growth factor beta like domain

Number of Sequence in 50% Dataset : 62

Number of Sequence in Full Dataset : 553

Average sequence length: 91.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00019	A9YRX4_9METZ_259_367	95.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00019	Q6PUC9_ANOGA_262_304	99.8

Sequence based PCA Plot of the family - PF00019 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=22 Length=8
Motif2 Start=13 Length=8
Motif3 Start=4 Length=8
Motif4 Start=101 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay