3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00015

Details:

PFam ID : PF00015

PFam Domain Description : Methyl-accepting chemotaxis protein (MCP) signalling domain

Number of Sequence in 50% Dataset : 1736

Number of Sequence in Full Dataset : 10694

Average sequence length: 200.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00015	Q46594_DESVU_1_52	95.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00015	Q1Q4N4_9BACT_1_61	99.9

Sequence based PCA Plot of the family - PF00015 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=29 Length=8
Motif2 Start=20 Length=8
Motif3 Start=11 Length=8
Motif4 Start=2 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay