3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00013

Details:

PFam ID : PF00013

PFam Domain Description : KH domain

Number of Sequence in 50% Dataset : 562

Number of Sequence in Full Dataset : 4282

Average sequence length: 62.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00013	C4PZX5_SCHMA_720_770	89.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00013	C4PZX5_SCHMA_1262_1327	99.8

Sequence based PCA Plot of the family - PF00013 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=37 Length=8
Motif2 Start=28 Length=8
Motif3 Start=12 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay