3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00012

Details:

PFam ID : PF00012

PFam Domain Description : Hsp70 protein

Number of Sequence in 50% Dataset : 1019

Number of Sequence in Full Dataset : 5523

Average sequence length: 356.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00012	D8LCN8_ECTSI_239_375	72.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00012	B9HMG9_POPTR_114_160	97.5

Sequence based PCA Plot of the family - PF00012 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=27
Motif2 Start=292 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay