3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00010

Details:

PFam ID : PF00010

PFam Domain Description : Helix-loop-helix DNA-binding domain

Number of Sequence in 50% Dataset : 170

Number of Sequence in Full Dataset : 2361

Average sequence length: 55.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00010	BH060_ARATH_211_308	78.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00010	BH060_ARATH_211_308	99.0

Sequence based PCA Plot of the family - PF00010 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=17 Length=18
Motif2 Start=45 Length=8
Motif3 Start=2 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay