3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00009

Details:

PFam ID : PF00009

PFam Domain Description : Elongation factor Tu GTP binding domain

Number of Sequence in 50% Dataset : 406

Number of Sequence in Full Dataset : 10482

Average sequence length: 214.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00009	A0YKT6_LYNSP_30_267	90.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00009	A4ZXS9_9NEOP_1_207	99.6

Sequence based PCA Plot of the family - PF00009 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=321 Length=11
Motif2 Start=98 Length=17
Motif3 Start=143 Length=11
Motif4 Start=295 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay