3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00008

Details:

PFam ID : PF00008

PFam Domain Description : EGF-like domain

Number of Sequence in 50% Dataset : 21

Number of Sequence in Full Dataset : 5455

Average sequence length: 32.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00008	E9J2K9_SOLIN_88_141	75

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00008	E9J2K9_SOLIN_88_141	97.1

Sequence based PCA Plot of the family - PF00008 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=25 Length=11
Motif2 Start=7 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay