3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00007

Details:

PFam ID : PF00007

PFam Domain Description : Cystine-knot domain

Number of Sequence in 50% Dataset : 41

Number of Sequence in Full Dataset : 280

Average sequence length: 93.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00007	C6SUS1_CIOSA_124_225	97.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00007	F1P002_CHICK_448_557	96.0

Sequence based PCA Plot of the family - PF00007 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=4 Length=21
Motif2 Start=76 Length=14
Motif3 Start=28 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay