3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00006

Details:

PFam ID : PF00006

PFam Domain Description : ATP synthase alpha/beta family, nucleotide-binding domain

Number of Sequence in 50% Dataset : 73

Number of Sequence in Full Dataset : 2542

Average sequence length: 204.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00006	D4LCC1_9FIRM_29_208	65.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00006	E5QR06_STAAH_27_132	98.4

Sequence based PCA Plot of the family - PF00006 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=30
Motif2 Start=47 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay