3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00005

Details:

PFam ID : PF00005

PFam Domain Description : ABC transporter

Number of Sequence in 50% Dataset : 4731

Number of Sequence in Full Dataset : 100658

Average sequence length: 126.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00005	E0TN01_STRZ6_3_68	96.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00005	B8P033_POSPM_510_739	99.9

Sequence based PCA Plot of the family - PF00005 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=55 Length=11
Motif4 Start=35 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay