3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00004

Details:

PFam ID : PF00004

PFam Domain Description : ATPase family associated with various cellular activities (AAA)

Number of Sequence in 50% Dataset : 939

Number of Sequence in Full Dataset : 11900

Average sequence length: 128.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00004	Q4SY03_TETNG_2280_2371	92.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00004	A7DZU6_CLOSP_3_87	99.7

Sequence based PCA Plot of the family - PF00004 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=55 Length=8
Motif2 Start=116 Length=8
Motif3 Start=86 Length=8
Motif4 Start=2 Length=20

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay