3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00002

Details:

PFam ID : PF00002

PFam Domain Description : 7 transmembrane receptor (Secretin family)

Number of Sequence in 50% Dataset : 412

Number of Sequence in Full Dataset : 1082

Average sequence length: 210.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00002	A7RVX5_NEMVE_960_1016	95.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00002	C4QU58_SCHMA_8_144	99.5

Sequence based PCA Plot of the family - PF00002 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=131 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay