3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00001

Details:

PFam ID : PF00001

PFam Domain Description : 7 transmembrane receptor (rhodopsin family)

Number of Sequence in 50% Dataset : 3280

Number of Sequence in Full Dataset : 10046

Average sequence length: 226.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00001	Q5KSY4_HUMAN_1_63	99.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00001	B4NZV1_DROYA_1_259	99.9

Sequence based PCA Plot of the family - PF00001 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=117 Length=8
Motif2 Start=170 Length=14
Motif3 Start=14 Length=11
Motif4 Start=33 Length=26

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay