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Paste the query sequence in fasta format ( view example | insert example )


Paste Motifs Below
(In order which they appear in the query sequence)
( Motif can be in SCANMOT pattern or PROSITE pattern ) view example | insert example (scanmot or prosite)

Order	Motifs
I
II
III
IV
V
VI
VII
VIII
IX
X

Click here to access a database of structural motifs for protein superfamilies.

Choose the database to run PSI-BLAST
pdb nr Swissprot-TrEMBL SCOP Custom Database E.coli A.thaliana D.melanogaster H.sapiens M.musculus S.cerevisiae C.elegans S.coelicolor
Select the number of iterations

1 2 3 4 5 6 7 8 9 10 11 12 13 14 15

Select e-value cut-off

10 1.0 0.1 0.001 0.0001 0.00001 0.000001 0.0000001 0.00000001 0.000000001 0.0000000001

Select the minimum percentage length cut-off of your hits
with relevance to the query

10 20 30 40 50 60 70 80 90 100

Wish to go for similar residue substitution?
eg: [F]=[FYW], [V]=[VIL], [D]=[DE], [H]=[HKR], [N]=[NQ], [C]=[CST], A=[AG]

Yes
No



Choose Relaxation filter for motif spacer length between query and hit (click here for details)

30 5 10 15 20 25 30 35 40 45 50 %
Choose the minimum number of motifs that should be present in the hits
Atleast   2 3 4 5 6 7 8 9 10   Motifs

############### PROSITE| PROFILE| PRINTS| FINDMOTIF| PFAM| BLOCKS| PDB| SCOP ###############

Contacts:
Sowdhamini.R -mini@ncbs.res.in
Saikat Chakrabarti -saikat@ncbs.res.in
Pugal.G -pugal (at) ncbs.res.in
Prem Anand. A -prem@ncbs.res.in
Nitin Bhardwaj -nitinb@che.iitb.ac.in