PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d3aa0a-  (   7 )    rvsdeekvriAAkfIthApPgeFnevfndVrlllnndnlLregAahAfaq
d3aa7b-  (   2 )       sdqqldcAldlmrrlppqqieknLsdLidl----------vpsLced
                        aaaaaaaaaaa       aaaaaaaaaaa              aaa

                             60        70        80        90        100 
d3aa0a-  (  57 )    YNmd---qftPvkIegyddqVLITehGdlgngrFlDPrnkiSFkFdhlrk
d3aa7b-  (  39 )    LlssvdqpLkiarDkvvgkdYLlcdyNrdg-dSyRSPwsnkYdp------
                    aaaa      bb        bb  333bb   bbb      bb       

                             110       120       130       140       150 
d3aa0a-  ( 104 )    eAsdpqpedtesalkqwrdaCDsaLraYVkdhypnGfCTVYGksidgqqT
d3aa7b-  (  82 )    pledGa--mPsarLrklEveaNnaFdqyrdlyfeggvSSVYLwdldhgFA
                                  aaaaaaaaaaaaaaaaaa    bbbbbbbbb  bbb

                             160       170       180       190       200 
d3aa0a-  ( 154 )    IIACIEshqfqpknfwNgRwrSeWkFtItp------ptAqVaAvLkiqvh
d3aa7b-  ( 130 )    GVILIkkag-dgskkikgcwDSIHvVeVqekssgrtAhYkLtSTVMlwlq
                    bbbbbbbb       bbbbbbbbbbbbbb        bbbbbbbbbbbbb

                             210       220       230       240       250 
d3aa0a-  ( 198 )    yyed----gnvqlvshkdiqdsvqVssdvqTAkeFikiIenaEneYqtai
d3aa7b-  ( 179 )    tnktgsgtmnlGgsltrqmekdetvsdssphiaNigrLVedMEnkIrstL
                    b         bbbbbbbbbbbbbb      aaaaaaaaaaaaaaaaaaaa

                             260       270       280 
d3aa0a-  ( 244 )    senyqtmsdttfkalrrqlpvtrtkidwnkils
d3aa7b-  ( 229 )    neiyfgktkdivnglr                 
                    aaaaa aaa aaaaa

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d3aa0a- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d3aa0a- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Capz alpha-1 subunit	Capz alpha-1 subunit	Chicken (Gallus gallus) [TaxId: 9031]		view
d3aa7b- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d3aa7b- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Capz beta-1 subunit	Capz beta-1 subunit	Chicken (Gallus gallus) [TaxId: 9031]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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Member	Chain	UniProtKB	GO term

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-	-	-	S	D	Q	Q	L	D	C	A	L	D	L	M	R	R	L	P	P	Q	Q	I	E	K	N	L	S	D	L	I	D	L	-	-	-	-	-	-	-	-	-	-	V	P	S	L	C	E	D	L	L	S	S	V	D	Q	P	L	K	I	A	R	D	K	V	V	G	K	D	Y	L	L	C	D	Y	N	R	D	G	-	D	S	Y	R	S	P	W	S	N	K	Y	D	P	-	-	-	-	-	-	P	L	E	D	G	A	-	-	M	P	S	A	R	L	R	K	L	E	V	E	A	N	N	A	F	D	Q	Y	R	D	L	Y	F	E	G	G	V	S	S	V	Y	L	W	D	L	D	H	G	F	A	G	V	I	L	I	K	K	A	G	-	D	G	S	K	K	I	K	G	C	W	D	S	I	H	V	V	E	V	Q	E	K	S	S	G	R	T	A	H	Y	K	L	T	S	T	V	M	L	W	L	Q	T	N	K	T	G	S	G	T	M	N	L	G	G	S	L	T	R	Q	M	E	K	D	E	T	V	S	D	S	S	P	H	I	A	N	I	G	R	L	V	E	D	M	E	N	K	I	R	S	T	L	N	E	I	Y	F	G	K	T	K	D	I	V	N	G	L	R	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

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-	-	-	S	D	Q	Q	L	D	C	A	L	D	L	M	R	R	L	P	P	Q	Q	I	E	K	N	L	S	D	L	I	D	L	-	-	-	-	-	-	-	-	-	-	V	P	S	L	C	E	D	L	L	S	S	V	D	Q	P	L	K	I	A	R	D	K	V	V	G	K	D	Y	L	L	C	D	Y	N	R	D	G	-	D	S	Y	R	S	P	W	S	N	K	Y	D	P	-	-	-	-	-	-	P	L	E	D	G	A	-	-	M	P	S	A	R	L	R	K	L	E	V	E	A	N	N	A	F	D	Q	Y	R	D	L	Y	F	E	G	G	V	S	S	V	Y	L	W	D	L	D	H	G	F	A	G	V	I	L	I	K	K	A	G	-	D	G	S	K	K	I	K	G	C	W	D	S	I	H	V	V	E	V	Q	E	K	S	S	G	R	T	A	H	Y	K	L	T	S	T	V	M	L	W	L	Q	T	N	K	T	G	S	G	T	M	N	L	G	G	S	L	T	R	Q	M	E	K	D	E	T	V	S	D	S	S	P	H	I	A	N	I	G	R	L	V	E	D	M	E	N	K	I	R	S	T	L	N	E	I	Y	F	G	K	T	K	D	I	V	N	G	L	R	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

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