PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1in0a1  (   2 )    p--sfdivse--itlhevrnavenAnrvlstrydFrgveAvIelneknet
d1in0a2  (  90 )    klyskeiklkqgietemAkkItklVkds--ki------kVqtqiq--geq
                                  aaaaaaaaaaaaaa            bbbbb    b

                             60        70        80        90  
d1in0a1  (  48 )    ikitTesdfqleqLieiligSCikrgiehssldipaesehhg
d1in0a2  ( 130 )    VrvtGksrddlqaViqlVksa--elgqp---fqfn---nfrd
                    bbbb   aaaaaaaaaaaaa

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d1in0a1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1in0a1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Hypothetical protein HI1034	YajQ-like	Haemophilus influenzae [TaxId: 727]		view
d1in0a2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1in0a2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Hypothetical protein HI1034	YajQ-like	Haemophilus influenzae [TaxId: 727]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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P	-	-	S	F	D	I	V	S	E	-	-	I	T	L	H	E	V	R	N	A	V	E	N	A	N	R	V	L	S	T	R	Y	D	F	R	G	V	E	A	V	I	E	L	N	E	K	N	E	T	I	K	I	T	T	E	S	D	F	Q	L	E	Q	L	I	E	I	L	I	G	S	C	I	K	R	G	I	E	H	S	S	L	D	I	P	A	E	S	E	H	H	G
K	L	Y	S	K	E	I	K	L	K	Q	G	I	E	T	E	M	A	K	K	I	T	K	L	V	K	D	S	-	-	K	I	-	-	-	-	-	-	K	V	Q	T	Q	I	Q	-	-	G	E	Q	V	R	V	T	G	K	S	R	D	D	L	Q	A	V	I	Q	L	V	K	S	A	-	-	E	L	G	Q	P	-	-	-	F	Q	F	N	-	-	-	N	F	R	D

Member	Chain	UniProtKB	GO term
d1in0a1	A	P44096	GO:0000166
d1in0a1	A	P44096	GO:0005829
d1in0a1	A	P44096	GO:0000166
d1in0a1	A	P44096	GO:0005829
d1in0a2	A	P44096	GO:0000166
d1in0a2	A	P44096	GO:0005829
d1in0a2	A	P44096	GO:0000166
d1in0a2	A	P44096	GO:0005829

									10										20										30										40										50										60										70										80										90
P	-	-	S	F	D	I	V	S	E	-	-	I	T	L	H	E	V	R	N	A	V	E	N	A	N	R	V	L	S	T	R	Y	D	F	R	G	V	E	A	V	I	E	L	N	E	K	N	E	T	I	K	I	T	T	E	S	D	F	Q	L	E	Q	L	I	E	I	L	I	G	S	C	I	K	R	G	I	E	H	S	S	L	D	I	P	A	E	S	E	H	H	G
K	L	Y	S	K	E	I	K	L	K	Q	G	I	E	T	E	M	A	K	K	I	T	K	L	V	K	D	S	-	-	K	I	-	-	-	-	-	-	K	V	Q	T	Q	I	Q	-	-	G	E	Q	V	R	V	T	G	K	S	R	D	D	L	Q	A	V	I	Q	L	V	K	S	A	-	-	E	L	G	Q	P	-	-	-	F	Q	F	N	-	-	-	N	F	R	D

									10										20										30										40										50										60										70										80										90
P	-	-	S	F	D	I	V	S	E	-	-	I	T	L	H	E	V	R	N	A	V	E	N	A	N	R	V	L	S	T	R	Y	D	F	R	G	V	E	A	V	I	E	L	N	E	K	N	E	T	I	K	I	T	T	E	S	D	F	Q	L	E	Q	L	I	E	I	L	I	G	S	C	I	K	R	G	I	E	H	S	S	L	D	I	P	A	E	S	E	H	H	G
K	L	Y	S	K	E	I	K	L	K	Q	G	I	E	T	E	M	A	K	K	I	T	K	L	V	K	D	S	-	-	K	I	-	-	-	-	-	-	K	V	Q	T	Q	I	Q	-	-	G	E	Q	V	R	V	T	G	K	S	R	D	D	L	Q	A	V	I	Q	L	V	K	S	A	-	-	E	L	G	Q	P	-	-	-	F	Q	F	N	-	-	-	N	F	R	D

									10										20										30										40										50										60										70										80										90
P	-	-	S	F	D	I	V	S	E	-	-	I	T	L	H	E	V	R	N	A	V	E	N	A	N	R	V	L	S	T	R	Y	D	F	R	G	V	E	A	V	I	E	L	N	E	K	N	E	T	I	K	I	T	T	E	S	D	F	Q	L	E	Q	L	I	E	I	L	I	G	S	C	I	K	R	G	I	E	H	S	S	L	D	I	P	A	E	S	E	H	H	G
K	L	Y	S	K	E	I	K	L	K	Q	G	I	E	T	E	M	A	K	K	I	T	K	L	V	K	D	S	-	-	K	I	-	-	-	-	-	-	K	V	Q	T	Q	I	Q	-	-	G	E	Q	V	R	V	T	G	K	S	R	D	D	L	Q	A	V	I	Q	L	V	K	S	A	-	-	E	L	G	Q	P	-	-	-	F	Q	F	N	-	-	-	N	F	R	D