PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1nyna-  (   1 )    mstvtkYfykgentdlivfAaseelvdeYlknpsigklsevvelfevftp
d1t95a2  (  11 )    d-kaviarlrkggeeFeVlVd-pylardLkegkeV-nfedLLaaeeVfkd
                        bbbbbb    bbbbbb  aaaaaaaa       aaaa      bb 

                             60        70        80        90        100 
d1nyna-  (  51 )    qdgrgaegelgaAskaqvenefgkgkkieevidlilrnGkpnsttsslkt
d1t95a2  (  58 )    Ak------kgerAsvdeLrkiFgt-ddvfeIArkII              
                              bb  aaaaaaa      aaaaaaaa               

                             110 
d1nyna-  ( 101 )    kggnagtkayn
d1t95a2

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d1nyna- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1nyna- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Hypothetical protein Yhr087W	Hypothetical protein Yhr087W	Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]		view
d1t95a2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1t95a2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Hypothetical protein AF0491, N-terminal domain	Hypothetical protein AF0491, N-terminal domain	Archaeoglobus fulgidus [TaxId: 2234]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

									10										20										30										40										50										60										70										80										90										100										110
M	S	T	V	T	K	Y	F	Y	K	G	E	N	T	D	L	I	V	F	A	A	S	E	E	L	V	D	E	Y	L	K	N	P	S	I	G	K	L	S	E	V	V	E	L	F	E	V	F	T	P	Q	D	G	R	G	A	E	G	E	L	G	A	A	S	K	A	Q	V	E	N	E	F	G	K	G	K	K	I	E	E	V	I	D	L	I	L	R	N	G	K	P	N	S	T	T	S	S	L	K	T	K	G	G	N	A	G	T	K	A	Y	N
D	-	K	A	V	I	A	R	L	R	K	G	G	E	E	F	E	V	L	V	D	-	P	Y	L	A	R	D	L	K	E	G	K	E	V	-	N	F	E	D	L	L	A	A	E	E	V	F	K	D	A	K	-	-	-	-	-	-	K	G	E	R	A	S	V	D	E	L	R	K	I	F	G	T	-	D	D	V	F	E	I	A	R	K	I	I	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

Member	Chain	UniProtKB	GO term
d1nyna_	A	P38804	GO:0003674
d1nyna_	A	P38804	GO:0005634
d1nyna_	A	P38804	GO:0005737
d1nyna_	A	P38804	GO:0006364
d1nyna_	A	P38804	GO:0042254
d1t95a2	A	O29759	GO:0042254
d1t95a2	A	O29759	GO:0042256
d1t95a2	A	O29759	GO:0042254
d1t95a2	A	O29759	GO:0042256

									10										20										30										40										50										60										70										80										90										100										110
M	S	T	V	T	K	Y	F	Y	K	G	E	N	T	D	L	I	V	F	A	A	S	E	E	L	V	D	E	Y	L	K	N	P	S	I	G	K	L	S	E	V	V	E	L	F	E	V	F	T	P	Q	D	G	R	G	A	E	G	E	L	G	A	A	S	K	A	Q	V	E	N	E	F	G	K	G	K	K	I	E	E	V	I	D	L	I	L	R	N	G	K	P	N	S	T	T	S	S	L	K	T	K	G	G	N	A	G	T	K	A	Y	N
D	-	K	A	V	I	A	R	L	R	K	G	G	E	E	F	E	V	L	V	D	-	P	Y	L	A	R	D	L	K	E	G	K	E	V	-	N	F	E	D	L	L	A	A	E	E	V	F	K	D	A	K	-	-	-	-	-	-	K	G	E	R	A	S	V	D	E	L	R	K	I	F	G	T	-	D	D	V	F	E	I	A	R	K	I	I	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

									10										20										30										40										50										60										70										80										90										100										110
M	S	T	V	T	K	Y	F	Y	K	G	E	N	T	D	L	I	V	F	A	A	S	E	E	L	V	D	E	Y	L	K	N	P	S	I	G	K	L	S	E	V	V	E	L	F	E	V	F	T	P	Q	D	G	R	G	A	E	G	E	L	G	A	A	S	K	A	Q	V	E	N	E	F	G	K	G	K	K	I	E	E	V	I	D	L	I	L	R	N	G	K	P	N	S	T	T	S	S	L	K	T	K	G	G	N	A	G	T	K	A	Y	N
D	-	K	A	V	I	A	R	L	R	K	G	G	E	E	F	E	V	L	V	D	-	P	Y	L	A	R	D	L	K	E	G	K	E	V	-	N	F	E	D	L	L	A	A	E	E	V	F	K	D	A	K	-	-	-	-	-	-	K	G	E	R	A	S	V	D	E	L	R	K	I	F	G	T	-	D	D	V	F	E	I	A	R	K	I	I	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

									10										20										30										40										50										60										70										80										90										100										110
M	S	T	V	T	K	Y	F	Y	K	G	E	N	T	D	L	I	V	F	A	A	S	E	E	L	V	D	E	Y	L	K	N	P	S	I	G	K	L	S	E	V	V	E	L	F	E	V	F	T	P	Q	D	G	R	G	A	E	G	E	L	G	A	A	S	K	A	Q	V	E	N	E	F	G	K	G	K	K	I	E	E	V	I	D	L	I	L	R	N	G	K	P	N	S	T	T	S	S	L	K	T	K	G	G	N	A	G	T	K	A	Y	N
D	-	K	A	V	I	A	R	L	R	K	G	G	E	E	F	E	V	L	V	D	-	P	Y	L	A	R	D	L	K	E	G	K	E	V	-	N	F	E	D	L	L	A	A	E	E	V	F	K	D	A	K	-	-	-	-	-	-	K	G	E	R	A	S	V	D	E	L	R	K	I	F	G	T	-	D	D	V	F	E	I	A	R	K	I	I	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-