PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1gpqa-  (   2 )     ddltIssLAkgettkaAFnqMvqgh-klpawVmk-gGtytpaqtVtlgd
d4ps6a1  (  25 )    eeqprLfeLlgqpgykatwha-fkgesdvpkwVsdAsgpSspStslsleg
                         aaaa      aaaaa           aaaa        bbbbb  

                             60        70        80        90        100 
d1gpqa-  (  49 )    etyqVMsaçkphdçgsqrIAVMwSeksnqMTGLfStidekts-------q
d4ps6a1  (  75 )    qpyVLAnSçkphdçgnnrLlVAFrgdksaayGLqVsLpdepaevqtpsky
                    bbbbbbbbb       bbbbbbb      bbbbbbb              

                             110       120       130     
d1gpqa-  (  92 )    ekltwLnVndaLsidGktVLfaALtgsLenhpdgfnf
d4ps6a1  ( 126 )    AtyrwygeP---srqVrelL-kqlesdp------nWk
                     bbbbb        aaaaa

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d1gpqa- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1gpqa- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Inhibitor of vertebrate lysozyme, Ivy	Inhibitor of vertebrate lysozyme, Ivy	Escherichia coli [TaxId: 562]		view
d4ps6a1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d4ps6a1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	Inhibitor of vertebrate lysozyme, Ivy	Pseudomonas aeruginosa, PA01 [TaxId: 208964]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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Member	Chain	UniProtKB	GO term
d1gpqa_	A	P0AD59	GO:0030288
d1gpqa_	A	P0AD59	GO:0042597
d1gpqa_	A	P0AD59	GO:0042803
d1gpqa_	A	P0AD59	GO:0043086
d1gpqa_	A	P0AD59	GO:0060241
d1gpqa_	A	P0AD59	GO:0061077
d1gpqa_	A	P00698	GO:0030288
d1gpqa_	A	P00698	GO:0042597
d1gpqa_	A	P00698	GO:0042803
d1gpqa_	A	P00698	GO:0043086
d1gpqa_	A	P00698	GO:0060241
d1gpqa_	A	P00698	GO:0061077

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