Superfamily : 89796 [ CoA-transferase family III (CaiB/BaiF) ]
Class : Alpha and beta proteins (a/b)
Fold : CoA-transferase family III (CaiB/BaiF)
# of Members : 6
Superposed Structure
solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x
beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x
hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x
 
                             10        20        30        40        50  
d1pt7a-  (   2 )          stplqgikVLDFTgvqsGPsCTQMLAWfgAdVIKIErpgvGdvT
d1xk7a2  (   2 )    dhLppkfGplaglrVVFsgieiaGPfAGq-FAewGAeVIWIEnvawaDtI
d2yima-  (   2 )          aGplsglrVVELagigPgPhAAmiLGDlgAdVVrIdrps-isr-
d4ed9a-  (   3 )          ntpldglkVVELArilaGPwVGQtLCDLGAdViKVEsp--gDdT
d4hl6a-  (   7 )          kGpfegllVIDMThvlNGPfGTqlLcnmgArVIKVEppghGDdT
d5yx6a-  (   6 )         pakpldgfrVLDFTqnvaGPlAGQvLVDLgAeVIKVEapg-GEaa
                                 bbbb     aaaaaaaaaaa   bbbbbb      33

                             60        70        80        90        100 
d1pt7a-  (  46 )    Rhql-rdip--didAlyFTmlNSnKrSIeLntktaeGkeVMekLIreAdI
d1xk7a2  (  53 )    rvqp-----------nypqlsRRNLHALSLnIfkdeGreAFLkl-ettdI
d2yima-  (  48 )    ------------------damlRNRriVtadlksdqglelAlkLIakAdV
d4ed9a-  (  46 )    rtwGppfidvegesAayFhaCNRgKrSItadfrt-egrelVrrLVaeAdV
d4hl6a-  (  51 )    rtfg-pyvd---gqSlyYSfiNHgKeSVvLdLkndhdksIFinMLkqAdV
d5yx6a-  (  50 )    rqit-svlpgrpplatyFlpnNRgKkSVtvdltteq-AqqMlrLAdtAdV
                    3                        bbbb        aaaaaaaa    b

                             110       120       130       140       150 
d1pt7a-  (  93 )    LVEnfhpgaidhmgFtwehIqeInprLIFGSIkGFdecs--pyvnvkAye
d1xk7a2  (  92 )    FIEaskGpaFarrgItdevLwqhnpkLVIAHLSgFgqygteeytnlpayn
d2yima-  (  80 )    LIEgyrpgvTerlgLgpeeCakvndrLIYARMtGwgqtg--prsqqaghd
d4ed9a-  (  97 )    VIEnf-lggLdkygLdyesLkainpqLIYCSItGFghtg--pyar-aGyd
d4hl6a-  (  97 )    LAEnfrPgtMeklgFswetLqeinprLIYASSsGFghtg--plkdapAyd
d5yx6a-  (  99 )    VLEafrpgtMe-lglGpddLrsrnpnLIYArLtaYggng--phgsrpgid
                    bbb             aaaaaaa    bbbbbb                a

                             160       170       180       190       200 
d1pt7a-  ( 141 )    nvAQaaGgAasttgfwdgpplvsaaalGdsn-TGmhLLigLlaAllhRek
d1xk7a2  ( 142 )    tiaQafsgyliqngdvd--qppafpytadyf-sGltAttaAlaalhkvre
d2yima-  ( 128 )    inyIslngIlhaigrgderpvpplnlvGdfgGGSmfLLvgIlaalwerqs
d4ed9a-  ( 145 )    fmIQgmGgimdltgepdrepqkigvafAdif-TGlySviaIqsalimrar
d4hl6a-  ( 145 )    tiIQamSgimmetgypdappvrvgtslAdlC-GGvyLfsgIvsalygrek
d5yx6a-  ( 147 )    lvVaaeAgmttgmptpg-kpqiipfqlVdna-SGhvLAqaVlaALlhrer
                    aaaaaa                       aa aaaaaaaaaaaaaaaaaa

                             210       220       230       240       250 
d1pt7a-  ( 190 )    tgrGqrvtmSmqdAVlnlcrvklrDqqrLdklgyLeeYPqypngtFgdaV
d1xk7a2  ( 190 )    tgkGesidIA-yevlr--gqyfd--yfn----------------g-gecp
d2yima-  ( 178 )    sgkGqvvdaAmvdgSsvliqmmwamrat----------------gmwtdt
d4ed9a-  ( 194 )    t-gGqhidmAlfdcMsgvlanqamnylasg-----------------ksp
d4hl6a-  ( 194 )    sqrGahvdiAMfdATlsflehglmayiatg-----------------ksp
d5yx6a-  ( 196 )    ngvAdvvqvAmydvAvglqa-qlmh-------------------------
                    a    bbbbbaaaaaa                                  

                             260       270       280       290       300 
d1pt7a-  ( 240 )    prgGnaggggqpGwiLkCkgwetdpnAyIyFtIq-eqnWenTCkAIgkpe
d1xk7a2  ( 224 )    rsk-gkdpyyAGCglYkCad------gyIv-eLvgitqIeeCFkdIgLah
d2yima-  ( 212 )    rGaNmldggAPYydtYeCadg-----ryVaVgAiepqfyaaMLagLglda
d4ed9a-  ( 227 )    krmgnahpniAPyqtLsVsd------gyFiIaCgndgqFgkLStlLgige
d4hl6a-  ( 227 )    qrlgnrhpymAPfdvFnTqd------kpItIcCgndklFsaLCqaLelte
d5yx6a-  ( 222 )    -------lntqPsdaFrTad------gyIvIsAy--phWqkLCylIgrpd
                                bbbbb          bbbbb      aaaaaaa   33

                             310       320       330       340       350 
d1pt7a-  ( 289 )    witdpays-----tahaRqphIfdIFaeIekyTvtidKheAvayLtqfdI
d1xk7a2  ( 268 )    LlgtpeIpegtqlIhriecpyGplVeekLdawLathtiaeVkerfaelnI
d2yima-  ( 257 )    ae----------LPpqndrarwpeLralLteaFashdrdhWgavFansdA
d4ed9a-  ( 271 )    lad--rFa-----tnsaRvanraaLtalLeerTkqwkrddLlaeLakigV
d4hl6a-  ( 271 )    LvndprFs-----snilRvqnqaiLkqyIertLktqaAevWlarIhevgV
d5yx6a-  ( 283 )    Lvd--rFa-----q--sRsn--aeLtaeLelaLasktAteWvqlLqangL
                    3                    aaaaaaaaaaaa    aaaaaaaa     

                             360       370       380       390       400 
d1pt7a-  ( 334 )    pCapvlsmkeisldpslrqsgsvveVeQplRgkYlTvGCpmkfsaftp--
d1xk7a2  ( 318 )    acakvltvpelesnpqyvaresitqwqTd-grtckgpnI-pkfknnpGq-
d2yima-  ( 297 )    cVtpvlafgevhnephiierntfyeag------gwqpmPaprfsrtass-
d4ed9a-  ( 316 )    pAgpintvadvfadpqf-argmkid---pqg--vpglRtpirfsdadLkl
d4hl6a-  ( 316 )    pVapllsvaeaiklpqtqarnmlIeA---gg--imMpGnpikisgcadph
d5yx6a-  ( 328 )    mAclahtw-qvvdtplfaendltleVg-----titvirtparyasfavvt
                     bbb          aaaaa   bbb         bbb             

                             410       420       430       
d1pt7a-  ( 382 )    dIkaAPllGehtaaVLqeLgysddeiaaMkqnhAI    
d1xk7a2  ( 367 )    iwrGp-shG-dTaaILknigysendiqeLvskgLAkved
d2yima-  ( 341 )    qPrppaati-dieaVLtdWdg                  
d4ed9a-  ( 361 )    d-srSPklnehGaaIraeL                    
d4hl6a-  ( 361 )    vmpgAAtldqhGeqIrqeFss                  
d5yx6a-  ( 378 )    --dppPtaGehnavfl                       
                               aaaaaaa
 

 

Domain IDNameFamilySourceDomainSTRING-DB
Hypothetical protein YfdWCoA-transferase family III (CaiB/BaiF)Escherichia coli [TaxId: 562]view
Crotonobetainyl-CoA:carnitine CoA-transferase, CaiBCoA-transferase family III (CaiB/BaiF)Escherichia coli [TaxId: 562]view
2-methylacyl-CoA racemase McrCoA-transferase family III (CaiB/BaiF)Mycobacterium tuberculosis [TaxId: 1773]view
automated matchesautomated matchesBrucella suis [TaxId: 204722]view
automated matchesautomated matchesEscherichia coli [TaxId: 83333]view
automated matchesautomated matchesMycobacterium tuberculosis [TaxId: 83332]view

 

No outliers

Created with Raphaëld5yx6a-d1pt7a-d4hl6a-d4ed9a-d2yima-d1xk7a2
FeatureDownload
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

 

10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430
- - - - - - S T P L Q G I K V L D F T G V Q S G P S C T Q M L A W F G A D V I K I E R P G V G D V T R H Q L - R D I P - - D I D A L Y F T M L N S N K R S I E L N T K T A E G K E V M E K L I R E A D I L V E N F H P G A I D H M G F T W E H I Q E I N P R L I F G S I K G F D E C S - - P Y V N V K A Y E N V A Q A A G G A A S T T G F W D G P P L V S A A A L G D S N - T G M H L L I G L L A A L L H R E K T G R G Q R V T M S M Q D A V L N L C R V K L R D Q Q R L D K L G Y L E E Y P Q Y P N G T F G D A V P R G G N A G G G G Q P G W I L K C K G W E T D P N A Y I Y F T I Q - E Q N W E N T C K A I G K P E W I T D P A Y S - - - - - T A H A R Q P H I F D I F A E I E K Y T V T I D K H E A V A Y L T Q F D I P C A P V L S M K E I S L D P S L R Q S G S V V E V E Q P L R G K Y L T V G C P M K F S A F T P - - D I K A A P L L G E H T A A V L Q E L G Y S D D E I A A M K Q N H A I - - - -
D H L P P K F G P L A G L R V V F S G I E I A G P F A G Q - F A E W G A E V I W I E N V A W A D T I R V Q P - - - - - - - - - - - N Y P Q L S R R N L H A L S L N I F K D E G R E A F L K L - E T T D I F I E A S K G P A F A R R G I T D E V L W Q H N P K L V I A H L S G F G Q Y G T E E Y T N L P A Y N T I A Q A F S G Y L I Q N G D V D - - Q P P A F P Y T A D Y F - S G L T A T T A A L A A L H K V R E T G K G E S I D I A - Y E V L R - - G Q Y F D - - Y F N - - - - - - - - - - - - - - - - G - G E C P R S K - G K D P Y Y A G C G L Y K C A D - - - - - - G Y I V - E L V G I T Q I E E C F K D I G L A H L L G T P E I P E G T Q L I H R I E C P Y G P L V E E K L D A W L A T H T I A E V K E R F A E L N I A C A K V L T V P E L E S N P Q Y V A R E S I T Q W Q T D - G R T C K G P N I - P K F K N N P G Q - I W R G P - S H G - D T A A I L K N I G Y S E N D I Q E L V S K G L A K V E D
- - - - - - A G P L S G L R V V E L A G I G P G P H A A M I L G D L G A D V V R I D R P S - I S R - - - - - - - - - - - - - - - - - - - D A M L R N R R I V T A D L K S D Q G L E L A L K L I A K A D V L I E G Y R P G V T E R L G L G P E E C A K V N D R L I Y A R M T G W G Q T G - - P R S Q Q A G H D I N Y I S L N G I L H A I G R G D E R P V P P L N L V G D F G G G S M F L L V G I L A A L W E R Q S S G K G Q V V D A A M V D G S S V L I Q M M W A M R A T - - - - - - - - - - - - - - - - G M W T D T R G A N M L D G G A P Y Y D T Y E C A D G - - - - - R Y V A V G A I E P Q F Y A A M L A G L G L D A A E - - - - - - - - - - L P P Q N D R A R W P E L R A L L T E A F A S H D R D H W G A V F A N S D A C V T P V L A F G E V H N E P H I I E R N T F Y E A G - - - - - - G W Q P M P A P R F S R T A S S - Q P R P P A A T I - D I E A V L T D W D G - - - - - - - - - - - - - - - - - -
- - - - - - N T P L D G L K V V E L A R I L A G P W V G Q T L C D L G A D V I K V E S P - - G D D T R T W G P P F I D V E G E S A A Y F H A C N R G K R S I T A D F R T - E G R E L V R R L V A E A D V V I E N F - L G G L D K Y G L D Y E S L K A I N P Q L I Y C S I T G F G H T G - - P Y A R - A G Y D F M I Q G M G G I M D L T G E P D R E P Q K I G V A F A D I F - T G L Y S V I A I Q S A L I M R A R T - G G Q H I D M A L F D C M S G V L A N Q A M N Y L A S G - - - - - - - - - - - - - - - - - K S P K R M G N A H P N I A P Y Q T L S V S D - - - - - - G Y F I I A C G N D G Q F G K L S T L L G I G E L A D - - R F A - - - - - T N S A R V A N R A A L T A L L E E R T K Q W K R D D L L A E L A K I G V P A G P I N T V A D V F A D P Q F - A R G M K I D - - - P Q G - - V P G L R T P I R F S D A D L K L D - S R S P K L N E H G A A I R A E L - - - - - - - - - - - - - - - - - - - -
- - - - - - K G P F E G L L V I D M T H V L N G P F G T Q L L C N M G A R V I K V E P P G H G D D T R T F G - P Y V D - - - G Q S L Y Y S F I N H G K E S V V L D L K N D H D K S I F I N M L K Q A D V L A E N F R P G T M E K L G F S W E T L Q E I N P R L I Y A S S S G F G H T G - - P L K D A P A Y D T I I Q A M S G I M M E T G Y P D A P P V R V G T S L A D L C - G G V Y L F S G I V S A L Y G R E K S Q R G A H V D I A M F D A T L S F L E H G L M A Y I A T G - - - - - - - - - - - - - - - - - K S P Q R L G N R H P Y M A P F D V F N T Q D - - - - - - K P I T I C C G N D K L F S A L C Q A L E L T E L V N D P R F S - - - - - S N I L R V Q N Q A I L K Q Y I E R T L K T Q A A E V W L A R I H E V G V P V A P L L S V A E A I K L P Q T Q A R N M L I E A - - - G G - - I M M P G N P I K I S G C A D P H V M P G A A T L D Q H G E Q I R Q E F S S - - - - - - - - - - - - - - - - - -
- - - - - P A K P L D G F R V L D F T Q N V A G P L A G Q V L V D L G A E V I K V E A P G - G E A A R Q I T - S V L P G R P P L A T Y F L P N N R G K K S V T V D L T T E Q - A Q Q M L R L A D T A D V V L E A F R P G T M E - L G L G P D D L R S R N P N L I Y A R L T A Y G G N G - - P H G S R P G I D L V V A A E A G M T T G M P T P G - K P Q I I P F Q L V D N A - S G H V L A Q A V L A A L L H R E R N G V A D V V Q V A M Y D V A V G L Q A - Q L M H - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - L N T Q P S D A F R T A D - - - - - - G Y I V I S A Y - - P H W Q K L C Y L I G R P D L V D - - R F A - - - - - Q - - S R S N - - A E L T A E L E L A L A S K T A T E W V Q L L Q A N G L M A C L A H T W - Q V V D T P L F A E N D L T L E V G - - - - - T I T V I R T P A R Y A S F A V V T - - D P P P T A G E H N A V F L - - - - - - - - - - - - - - - - - - - - - - -

 

 

 

 

 

 
Contact: Prof. R. Sowdhamini - mini@ncbs.res.in