PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1mvfd-  (   4 )                                                      
d1n0ea1  (  26 )    mLlgtfnitLdaknrIsLpakLrafFegsIVINrGfenCLEVRkpqdfqk
d1yfba-  (   2 )    f------------------------mkstgivrkvdelgrvvipielrrt
                                                                      

                             60        70        80        90        100 
d1mvfd-  (   4 )                              ssvrwgnspavripatlmqalnln
d1n0ea1  (  76 )    yfeqfnsfpstqkdtrtlkrlIfananfvdvdtagrVlIpnnLindAkLd
d1yfba-  (  28 )    lgiae--------------------------------------------k
                                                                      

                             110       120       130     
d1mvfd-  (  29 )    iddvidlvdgkliiepv                    
d1n0ea1  ( 126 )    keIVLigqfdhLeIWdkklyedylansesletvaerm
d1yfba-  (  34 )    daleiyvddekiilkkykpn                 
                         bb    bb

Domains
Outliers

Domain ID	Name	Family	Source	STRING-DB
d1mvfd- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1mvfd- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	MazE	Kis/PemI addiction antidote	Escherichia coli [TaxId: 562]	view
d1n0ea1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1n0ea1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Hypothetical protein MraZ	Hypothetical protein MraZ	Mycoplasma pneumoniae [TaxId: 2104]	view
d1yfba- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1yfba- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Transcription-state regulator AbrB, the N-terminal DNA recognition domain	AbrB N-terminal domain-like	Bacillus subtilis [TaxId: 1423]	view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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Member	Chain	UniProtKB	GO term
d1mvfd_	D	P0AE72	GO:0003677
d1mvfd_	D	P0AE72	GO:0003690
d1mvfd_	D	P0AE72	GO:0005515
d1mvfd_	D	P0AE72	GO:0006355
d1mvfd_	D	P0AE72	GO:0032991
d1mvfd_	D	P0AE72	GO:0040008
d1mvfd_	D	P0AE72	GO:0042803
d1mvfd_	D	P0AE72	GO:0044010
d1mvfd_	D	P0AE72	GO:0044877
d1mvfd_	D	P0AE72	GO:0097351
d1mvfd_	D	P0AE72	GO:0110001

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