PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1n1ca1  (   4 )      vdinparalvyqllsslfarevdeqrlkeLtseaaqqfWeqlSleanf
d1s9ua1  (   2 )    ttflqrdefAvTArvLGaLFyysP----e----sheTaplvqallnddwq
d2o9xa1  (   2 )                                                      
d2xola1  (   1 )        mtigRakVYaTLSkIFyhlf----ydeaIpkdcreiIekfg-----
                           aaaaaaaaaaaaaa                aaaaa        

                             60        70        80        90        100 
d1n1ca1  (  52 )    tqsVdkirstLngik----ddeallelaadycglflg-saspyaslylf-
d1s9ua1  (  44 )    aqwpldaeaLapVaaFkthseeslpqAwqrLFigpyalpSpPwGSVWLdr
d2o9xa1  (   2 )                                                      
d2xola1  (  38 )    ------------eIdfnlr-----svlVr-----------eLrGSv-lik
                                            aaaaa                     

                             110       120       130       140       150 
d1n1ca1  ( 108 )    ------geqhqeflhqsk-----vqshfp-----epadhlavlay--ahl
d1s9ua1  (  95 )    esv--lfgdsTlaLrqWr-engiq----------epeDhFGsLLllAAwL
d2o9xa1  (   2 )                                        rhlfslfsypdgaa
d2xola1  (  59 )    dmpqslaevyesvMkdFYerygfqAseLhADHIAVELaFMskLVerEisL
                                aaaa                                aa

                             160       170       180       190       200 
d1n1ca1  ( 147 )    cchsensvqlsflqtcVnswLakfinhltqcnn--gfysavAtltlawVk
d1s9ua1  ( 139 )    aendrhheCeqLLAwhLFPWSsrFLdvFIdhA-gHpFYqALGqLArlTLa
d2o9xa1  (  27 )    aggtavdalqveytslFppçppyqSeegvygAsraalysygnyyePpDhs
d2xola1  ( 109 )    aqqmkeeelykIra-aQhrFIkahLqpLVknLpsapLLnfVrdfVredAk
                    aa   aaaaaaaaaaa    aaa aaaaaa      aaaaaaaaaaaaaa

                             210       220     
d1n1ca1  ( 196 )    qdiaqlepavaiis             
d1s9ua1  ( 188 )    qwqaqLiipvavkplfr          
d2o9xa1  ( 107 )    velfsnpelldrdwlfaçyatfaaffl
d2xola1  ( 158 )    yLysslvge                  
                    aaaaa

Domains
Outliers

Domain ID	Name	Family	Source	STRING-DB
d1n1ca1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1n1ca1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	TorA specific chaperone TorD	TorD-like	Shewanella massilia [TaxId: 76854]	view
d1s9ua1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1s9ua1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Putative component of anaerobic dehydrogenases YnfI	TorD-like	Salmonella typhimurium [TaxId: 90371]	view
d2o9xa1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2o9xa1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Reductase assembly protein AF0173	TorD-like	Archaeoglobus fulgidus [TaxId: 2234]	view
d2xola1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2xola1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	TorD-like	Archaeoglobus fulgidus [TaxId: 2234]	view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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Member	Chain	UniProtKB	GO term

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T	T	F	L	Q	R	D	E	F	A	V	T	A	R	V	L	G	A	L	F	Y	Y	S	P	-	-	-	-	E	-	-	-	-	S	H	E	T	A	P	L	V	Q	A	L	L	N	D	D	W	Q	A	Q	W	P	L	D	A	E	A	L	A	P	V	A	A	F	K	T	H	S	E	E	S	L	P	Q	A	W	Q	R	L	F	I	G	P	Y	A	L	P	S	P	P	W	G	S	V	W	L	D	R	E	S	V	-	-	L	F	G	D	S	T	L	A	L	R	Q	W	R	-	E	N	G	I	Q	-	-	-	-	-	-	-	-	-	-	E	P	E	D	H	F	G	S	L	L	L	L	A	A	W	L	A	E	N	D	R	H	H	E	C	E	Q	L	L	A	W	H	L	F	P	W	S	S	R	F	L	D	V	F	I	D	H	A	-	G	H	P	F	Y	Q	A	L	G	Q	L	A	R	L	T	L	A	Q	W	Q	A	Q	L	I	I	P	V	A	V	K	P	L	F	R	-	-	-	-	-	-	-	-	-	-
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-	-	-	-	M	T	I	G	R	A	K	V	Y	A	T	L	S	K	I	F	Y	H	L	F	-	-	-	-	Y	D	E	A	I	P	K	D	C	R	E	I	I	E	K	F	G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	E	I	D	F	N	L	R	-	-	-	-	-	S	V	L	V	R	-	-	-	-	-	-	-	-	-	-	-	E	L	R	G	S	V	-	L	I	K	D	M	P	Q	S	L	A	E	V	Y	E	S	V	M	K	D	F	Y	E	R	Y	G	F	Q	A	S	E	L	H	A	D	H	I	A	V	E	L	A	F	M	S	K	L	V	E	R	E	I	S	L	A	Q	Q	M	K	E	E	E	L	Y	K	I	R	A	-	A	Q	H	R	F	I	K	A	H	L	Q	P	L	V	K	N	L	P	S	A	P	L	L	N	F	V	R	D	F	V	R	E	D	A	K	Y	L	Y	S	S	L	V	G	E	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

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