PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1stma-  (  17 )                     aa--atslvyDtcyvt---Lter-attsFqRqs
d1vtz0-  (  12 )              tmravkrminthlehkrfalinsgntNataGtVqnLSngI
d4oq9a-  (  16 )    nsnvvtmiragsypkvnpt--ptwvraIpfevs---Vqsg-iafkVpVgs
                                             bbbbbbb           bb     

                             60        70        80        90        100 
d1stma-  (  44 )    --FptLkgmgdraFqVvaFtIqGvSa----apLmYnArLynpgdt-----
d1vtz0-  (  52 )    iqgddinqRsgdqVrIvsHkLhVrGtAitvsQtFrFIWFrDnmNrGttPt
d4oq9a-  (  60 )    LfsanfrTdsftsVtVmsVrAwTqltPpvneySfVrLkPlfkt-------
                                 bbbbbbbbbb          bbbbbb           

                             110       120       130       140       150 
d1stma-  (  83 )    ---------------------dsvhaTgvqlMg-------tvprtvrLtP
d1vtz0-  ( 102 )    vleVLntanfmsqynpiTlqqkrFtilkdVtLnCsltgesikdriinlpg
d4oq9a-  ( 103 )    ------------------------gdsteefegrAs--nintrAsvgyrI
                                                  bb            bbbb  

                             160       170       180       190       200 
d1stma-  ( 105 )    rvgqnnwF-fGnTeea---etILAIdGlvstkganApsNtViVtGcFrLa
d1vtz0-  ( 152 )    q---lVnYngatavaaSNGpGAIFMLQIG---dslvGlWdSsYeAvYTDa
d4oq9a-  ( 127 )    ptnlrqnt-va----a---dnVCeVrSnCr---------qVaLvIsCcFn
                                          bbbbb            bbbbbbbbb  

                           
d1stma-  ( 151 )    pselqss
d1vtz0-                    
d4oq9a-

Domains
Outliers

Domain ID	Name	Family	Source	STRING-DB
d1stma- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1stma- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	SPMV coat protein	Satellite viruses	Satellite panicum mosaic virus [TaxId: 154834]	view
d1vtz0- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1vtz0- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	STNV coat protein	Satellite viruses	Satellite tobacco necrosis virus [TaxId: 12881]	view
d4oq9a- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d4oq9a- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	STNV coat protein	Satellite viruses	Satellite tobacco necrosis virus [TaxId: 12881]	view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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Member	Chain	UniProtKB	GO term
d1stma_	A	Q86993	GO:0005198
d1stma_	A	Q86993	GO:0019028

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