PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1ug8a1  (   8 )                        dqkkfidqviekiedFlqseekrsleldp-
d1whra1  ( 133 )    tdstGidlheflvntlkknprdrmmllklEqeileFindnnnqfkkfpq-
d2lrra-  ( 717 )             pegvesqdg-------vdhframiveFmas-kkmqleFpps
                                               aaaaaaaaaa      bbb    

                             60        70        80        90        100 
d1ug8a1  (  37 )    CtgfqrkliyqtlswkypkgihvetletdkkerHiviskvdeeer     
d1whra1  ( 182 )    MtsyhrmllhrvAayF---gMdhnvd--qtg-kaviinkt-sntripeqr
d2lrra-  ( 750 )    lnshdrlrvhqiAeeh---glrhdssgegk-rrfitvskra         
                       aaaaaaaaaaaa       bbb         bbbb            

                             110       
d1ug8a1                                
d1whra1  ( 225 )    Fsehikdekntefqqrfil
d2lrra-

Domains
Outliers

Domain ID	Name	Family	Source	STRING-DB
d1ug8a1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1ug8a1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Poly(A)-specific ribonuclease PARN	R3H domain	Mouse (Mus musculus) [TaxId: 10090]	view
d1whra1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1whra1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	R3H domain protein KIAA1002	R3H domain	Human (Homo sapiens) [TaxId: 9606]	view
d2lrra- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2lrra- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	R3H domain	Human (Homo sapiens) [TaxId: 9606]	view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	D	Q	K	K	F	I	D	Q	V	I	E	K	I	E	D	F	L	Q	S	E	E	K	R	S	L	E	L	D	P	-	C	T	G	F	Q	R	K	L	I	Y	Q	T	L	S	W	K	Y	P	K	G	I	H	V	E	T	L	E	T	D	K	K	E	R	H	I	V	I	S	K	V	D	E	E	E	R	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
T	D	S	T	G	I	D	L	H	E	F	L	V	N	T	L	K	K	N	P	R	D	R	M	M	L	L	K	L	E	Q	E	I	L	E	F	I	N	D	N	N	N	Q	F	K	K	F	P	Q	-	M	T	S	Y	H	R	M	L	L	H	R	V	A	A	Y	F	-	-	-	G	M	D	H	N	V	D	-	-	Q	T	G	-	K	A	V	I	I	N	K	T	-	S	N	T	R	I	P	E	Q	R	F	S	E	H	I	K	D	E	K	N	T	E	F	Q	Q	R	F	I	L
-	-	-	-	-	-	-	-	-	P	E	G	V	E	S	Q	D	G	-	-	-	-	-	-	-	V	D	H	F	R	A	M	I	V	E	F	M	A	S	-	K	K	M	Q	L	E	F	P	P	S	L	N	S	H	D	R	L	R	V	H	Q	I	A	E	E	H	-	-	-	G	L	R	H	D	S	S	G	E	G	K	-	R	R	F	I	T	V	S	K	R	A	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

Member	Chain	UniProtKB	GO term

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-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	D	Q	K	K	F	I	D	Q	V	I	E	K	I	E	D	F	L	Q	S	E	E	K	R	S	L	E	L	D	P	-	C	T	G	F	Q	R	K	L	I	Y	Q	T	L	S	W	K	Y	P	K	G	I	H	V	E	T	L	E	T	D	K	K	E	R	H	I	V	I	S	K	V	D	E	E	E	R	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
T	D	S	T	G	I	D	L	H	E	F	L	V	N	T	L	K	K	N	P	R	D	R	M	M	L	L	K	L	E	Q	E	I	L	E	F	I	N	D	N	N	N	Q	F	K	K	F	P	Q	-	M	T	S	Y	H	R	M	L	L	H	R	V	A	A	Y	F	-	-	-	G	M	D	H	N	V	D	-	-	Q	T	G	-	K	A	V	I	I	N	K	T	-	S	N	T	R	I	P	E	Q	R	F	S	E	H	I	K	D	E	K	N	T	E	F	Q	Q	R	F	I	L
-	-	-	-	-	-	-	-	-	P	E	G	V	E	S	Q	D	G	-	-	-	-	-	-	-	V	D	H	F	R	A	M	I	V	E	F	M	A	S	-	K	K	M	Q	L	E	F	P	P	S	L	N	S	H	D	R	L	R	V	H	Q	I	A	E	E	H	-	-	-	G	L	R	H	D	S	S	G	E	G	K	-	R	R	F	I	T	V	S	K	R	A	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

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-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	D	Q	K	K	F	I	D	Q	V	I	E	K	I	E	D	F	L	Q	S	E	E	K	R	S	L	E	L	D	P	-	C	T	G	F	Q	R	K	L	I	Y	Q	T	L	S	W	K	Y	P	K	G	I	H	V	E	T	L	E	T	D	K	K	E	R	H	I	V	I	S	K	V	D	E	E	E	R	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
T	D	S	T	G	I	D	L	H	E	F	L	V	N	T	L	K	K	N	P	R	D	R	M	M	L	L	K	L	E	Q	E	I	L	E	F	I	N	D	N	N	N	Q	F	K	K	F	P	Q	-	M	T	S	Y	H	R	M	L	L	H	R	V	A	A	Y	F	-	-	-	G	M	D	H	N	V	D	-	-	Q	T	G	-	K	A	V	I	I	N	K	T	-	S	N	T	R	I	P	E	Q	R	F	S	E	H	I	K	D	E	K	N	T	E	F	Q	Q	R	F	I	L
-	-	-	-	-	-	-	-	-	P	E	G	V	E	S	Q	D	G	-	-	-	-	-	-	-	V	D	H	F	R	A	M	I	V	E	F	M	A	S	-	K	K	M	Q	L	E	F	P	P	S	L	N	S	H	D	R	L	R	V	H	Q	I	A	E	E	H	-	-	-	G	L	R	H	D	S	S	G	E	G	K	-	R	R	F	I	T	V	S	K	R	A	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

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T	D	S	T	G	I	D	L	H	E	F	L	V	N	T	L	K	K	N	P	R	D	R	M	M	L	L	K	L	E	Q	E	I	L	E	F	I	N	D	N	N	N	Q	F	K	K	F	P	Q	-	M	T	S	Y	H	R	M	L	L	H	R	V	A	A	Y	F	-	-	-	G	M	D	H	N	V	D	-	-	Q	T	G	-	K	A	V	I	I	N	K	T	-	S	N	T	R	I	P	E	Q	R	F	S	E	H	I	K	D	E	K	N	T	E	F	Q	Q	R	F	I	L
-	-	-	-	-	-	-	-	-	P	E	G	V	E	S	Q	D	G	-	-	-	-	-	-	-	V	D	H	F	R	A	M	I	V	E	F	M	A	S	-	K	K	M	Q	L	E	F	P	P	S	L	N	S	H	D	R	L	R	V	H	Q	I	A	E	E	H	-	-	-	G	L	R	H	D	S	S	G	E	G	K	-	R	R	F	I	T	V	S	K	R	A	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-