PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1gtda-  (   2 )       kfVeVrirlkkg-lnpeAatiera-lallgyevedtdttdvitft-d
d1t3ta3  (   1 )       mmeilrgspA--lsafrinkllar-FqaanLqVhnIyAeyVHFAdln
d1t4aa-  (   2 )       ykVkVyVslkesvlDpqGsavqha-lhstynevqdvrigky-eltie
d1vq3a1  (   1 )    lplfkFAIdVqyrsnvrdprGetierv-leekglpvkklrlgksihleve
d2zw2a-  (   4 )     mlYrVeLiItnkegvrdpeGetiqryvvsrfsdkiietragkylvfrvn
                        bbbbbbbb      aaaaaaaaa aa            bbbbbb  

                             60        70        80        90        100 
d1gtda-  (  49 )    edsleavereve-dCqr----------------------llCnpv-----
d1t3ta3  (  45 )    apLndseqaqLtrlLygpalsshtpagklLLVTppgtispwSskatdiAh
d1t4aa-  (  49 )    ks-drdldvlvk-eCek----------------------llAntv-----
d1vq3a1  (  51 )    an-k-eAyeiVk-aCee----------------------llVnpv-----
d2zw2a-  (  53 )    SssqqeAtelVkklAdem---------------------rlynpi-----
                          aaaaaa                                      

                             110       120       130       140       150 
d1gtda-  (  72 )    ---------ihdydvsIne                               
d1t3ta3  (  97 )    ncgLqqVdrLErgvAyyIeAstLtaeqwrqVaaeLhdrmmetvfssltdA
d1t4aa-  (  71 )    ---------iedyryevee                               
d1vq3a1  (  74 )    ---------veeyeVrel                                
d2zw2a-  (  77 )    ---------vhkieirAnrie                             
                              bbbbbbb                                 

                          
d1gtda-                   
d1t3ta3  ( 147 )    ekLfih
d1t4aa-                   
d1vq3a1                   
d2zw2a-

Domains
Outliers

Domain ID	Name	Family	Source	STRING-DB
d1gtda- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1gtda- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	PurS subunit of FGAM synthetase	PurS subunit of FGAM synthetase	Methanobacterium thermoautotrophicum [TaxId: 145262]	view
d1t3ta3 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1t3ta3 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	FGAM synthase PurL, PurS-like domain	FGAM synthase PurL, PurS-like domain	Salmonella typhimurium [TaxId: 90371]	view
d1t4aa- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1t4aa- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	PurS subunit of FGAM synthetase	PurS subunit of FGAM synthetase	Bacillus subtilis [TaxId: 1423]	view
d1vq3a1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1vq3a1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	PurS subunit of FGAM synthetase	PurS subunit of FGAM synthetase	Thermotoga maritima [TaxId: 2336]	view
d2zw2a- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2zw2a- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Sulfolobus tokodaii [TaxId: 111955]	view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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Member	Chain	UniProtKB	GO term
d1gtda_	A	O26271	GO:0004642
d1gtda_	A	O26271	GO:0005524
d1gtda_	A	O26271	GO:0005737
d1gtda_	A	O26271	GO:0006164
d1gtda_	A	O26271	GO:0006189
d1gtda_	A	O26271	GO:0016874
d1t3ta3	A	P74881	GO:0004642
d1t3ta3	A	P74881	GO:0005524
d1t3ta3	A	P74881	GO:0005737
d1t3ta3	A	P74881	GO:0006164
d1t3ta3	A	P74881	GO:0006189
d1t3ta3	A	P74881	GO:0006541
d1t3ta3	A	P74881	GO:0016874
d1t3ta3	A	P74881	GO:0046872
d1t3ta3	A	P74881	GO:0004642
d1t3ta3	A	P74881	GO:0005524
d1t3ta3	A	P74881	GO:0005737
d1t3ta3	A	P74881	GO:0006164
d1t3ta3	A	P74881	GO:0006189
d1t3ta3	A	P74881	GO:0006541
d1t3ta3	A	P74881	GO:0016874
d1t3ta3	A	P74881	GO:0046872
d1t3ta3	A	P74881	GO:0004642
d1t3ta3	A	P74881	GO:0005524
d1t3ta3	A	P74881	GO:0005737
d1t3ta3	A	P74881	GO:0006164
d1t3ta3	A	P74881	GO:0006189
d1t3ta3	A	P74881	GO:0006541
d1t3ta3	A	P74881	GO:0016874
d1t3ta3	A	P74881	GO:0046872
d1t3ta3	A	P74881	GO:0004642
d1t3ta3	A	P74881	GO:0005524
d1t3ta3	A	P74881	GO:0005737
d1t3ta3	A	P74881	GO:0006164
d1t3ta3	A	P74881	GO:0006189
d1t3ta3	A	P74881	GO:0006541
d1t3ta3	A	P74881	GO:0016874
d1t3ta3	A	P74881	GO:0046872
d1t3ta3	A	P74881	GO:0004642
d1t3ta3	A	P74881	GO:0005524
d1t3ta3	A	P74881	GO:0005737
d1t3ta3	A	P74881	GO:0006164
d1t3ta3	A	P74881	GO:0006189
d1t3ta3	A	P74881	GO:0006541
d1t3ta3	A	P74881	GO:0016874
d1t3ta3	A	P74881	GO:0046872
d1t3ta3	A	P74881	GO:0004642
d1t3ta3	A	P74881	GO:0005524
d1t3ta3	A	P74881	GO:0005737
d1t3ta3	A	P74881	GO:0006164
d1t3ta3	A	P74881	GO:0006189
d1t3ta3	A	P74881	GO:0006541
d1t3ta3	A	P74881	GO:0016874
d1t3ta3	A	P74881	GO:0046872
d1t3ta3	A	P74881	GO:0004642
d1t3ta3	A	P74881	GO:0005524
d1t3ta3	A	P74881	GO:0005737
d1t3ta3	A	P74881	GO:0006164
d1t3ta3	A	P74881	GO:0006189
d1t3ta3	A	P74881	GO:0006541
d1t3ta3	A	P74881	GO:0016874
d1t3ta3	A	P74881	GO:0046872
d1t3ta3	A	P74881	GO:0004642
d1t3ta3	A	P74881	GO:0005524
d1t3ta3	A	P74881	GO:0005737
d1t3ta3	A	P74881	GO:0006164
d1t3ta3	A	P74881	GO:0006189
d1t3ta3	A	P74881	GO:0006541
d1t3ta3	A	P74881	GO:0016874
d1t3ta3	A	P74881	GO:0046872
d1t3ta3	A	P74881	GO:0004642
d1t3ta3	A	P74881	GO:0005524
d1t3ta3	A	P74881	GO:0005737
d1t3ta3	A	P74881	GO:0006164
d1t3ta3	A	P74881	GO:0006189
d1t3ta3	A	P74881	GO:0006541
d1t3ta3	A	P74881	GO:0016874
d1t3ta3	A	P74881	GO:0046872
d1t4aa_	A	P12049	GO:0004642
d1t4aa_	A	P12049	GO:0005524
d1t4aa_	A	P12049	GO:0005737
d1t4aa_	A	P12049	GO:0006164
d1t4aa_	A	P12049	GO:0006189
d1t4aa_	A	P12049	GO:0016874

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-	-	-	K	F	V	E	V	R	I	R	L	K	K	G	-	L	N	P	E	A	A	T	I	E	R	A	-	L	A	L	L	G	Y	E	V	E	D	T	D	T	T	D	V	I	T	F	T	-	D	E	D	S	L	E	A	V	E	R	E	V	E	-	D	C	Q	R	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	L	L	C	N	P	V	-	-	-	-	-	-	-	-	-	-	-	-	-	-	I	H	D	Y	D	V	S	I	N	E	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
-	-	-	M	M	E	I	L	R	G	S	P	A	-	-	L	S	A	F	R	I	N	K	L	L	A	R	-	F	Q	A	A	N	L	Q	V	H	N	I	Y	A	E	Y	V	H	F	A	D	L	N	A	P	L	N	D	S	E	Q	A	Q	L	T	R	L	L	Y	G	P	A	L	S	S	H	T	P	A	G	K	L	L	L	V	T	P	P	G	T	I	S	P	W	S	S	K	A	T	D	I	A	H	N	C	G	L	Q	Q	V	D	R	L	E	R	G	V	A	Y	Y	I	E	A	S	T	L	T	A	E	Q	W	R	Q	V	A	A	E	L	H	D	R	M	M	E	T	V	F	S	S	L	T	D	A	E	K	L	F	I	H
-	-	-	Y	K	V	K	V	Y	V	S	L	K	E	S	V	L	D	P	Q	G	S	A	V	Q	H	A	-	L	H	S	T	Y	N	E	V	Q	D	V	R	I	G	K	Y	-	E	L	T	I	E	K	S	-	D	R	D	L	D	V	L	V	K	-	E	C	E	K	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	L	L	A	N	T	V	-	-	-	-	-	-	-	-	-	-	-	-	-	-	I	E	D	Y	R	Y	E	V	E	E	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
L	P	L	F	K	F	A	I	D	V	Q	Y	R	S	N	V	R	D	P	R	G	E	T	I	E	R	V	-	L	E	E	K	G	L	P	V	K	K	L	R	L	G	K	S	I	H	L	E	V	E	A	N	-	K	-	E	A	Y	E	I	V	K	-	A	C	E	E	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	L	L	V	N	P	V	-	-	-	-	-	-	-	-	-	-	-	-	-	-	V	E	E	Y	E	V	R	E	L	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
-	M	L	Y	R	V	E	L	I	I	T	N	K	E	G	V	R	D	P	E	G	E	T	I	Q	R	Y	V	V	S	R	F	S	D	K	I	I	E	T	R	A	G	K	Y	L	V	F	R	V	N	S	S	S	Q	Q	E	A	T	E	L	V	K	K	L	A	D	E	M	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	R	L	Y	N	P	I	-	-	-	-	-	-	-	-	-	-	-	-	-	-	V	H	K	I	E	I	R	A	N	R	I	E	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

									10										20										30										40										50										60										70										80										90										100										110										120										130										140										150
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-	-	-	Y	K	V	K	V	Y	V	S	L	K	E	S	V	L	D	P	Q	G	S	A	V	Q	H	A	-	L	H	S	T	Y	N	E	V	Q	D	V	R	I	G	K	Y	-	E	L	T	I	E	K	S	-	D	R	D	L	D	V	L	V	K	-	E	C	E	K	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	L	L	A	N	T	V	-	-	-	-	-	-	-	-	-	-	-	-	-	-	I	E	D	Y	R	Y	E	V	E	E	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
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-	M	L	Y	R	V	E	L	I	I	T	N	K	E	G	V	R	D	P	E	G	E	T	I	Q	R	Y	V	V	S	R	F	S	D	K	I	I	E	T	R	A	G	K	Y	L	V	F	R	V	N	S	S	S	Q	Q	E	A	T	E	L	V	K	K	L	A	D	E	M	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	R	L	Y	N	P	I	-	-	-	-	-	-	-	-	-	-	-	-	-	-	V	H	K	I	E	I	R	A	N	R	I	E	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-