PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1m1ha2  (   5 )    qvqelekkWYaLqVepgkEneAkenLlkvLelegLkdlVdeVivPan---
d1nz8a-  (   2 )         sieWyAvhtlvgqEekAkanlekrikafglqdkifqvliPteevv
d2k06a-  (   1 )    mseapkkrwYvvqAfsgfEgrvatslrehiklhnmedlFgevmvPteevv
                           bbbbbb     aaaaaaaaaaaaaa        bbb       

                             60        70        80        90        100 
d1m1ha2  ( 133 )    -------------kifpgyILIkAhmn-----dkLlmAIekTphVfrPvm
d1nz8a-  (  47 )    elreggkkevvrkklfpgylFiqMdlgdeeepneAwevvrgtpgitgfvg
d2k06a-  (  51 )    e-irggqrrkserkffpgyvlvqMvmn-----daSwhlvrsvprvmgFig
                                      bbbbbb         aaaaaa           

                             110       120       
d1m1ha2  ( 165 )    vg-gkpvplkeeeVqnilnqikr      
d1nz8a-  (  97 )    agm-rPvplspdevrhilevSgllg    
d2k06a-  (  95 )    gtsdrPapisdkevdaimnrlqqvgdkpr
                              aaaaaaaaaa

Domains
Outliers

Domain ID	Name	Family	Source	STRING-DB
d1m1ha2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1m1ha2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	N-utilization substance G protein NusG, N-terminal domain	N-utilization substance G protein NusG, N-terminal domain	Aquifex aeolicus [TaxId: 63363]	view
d1nz8a- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1nz8a- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	N-utilization substance G protein NusG, N-terminal domain	N-utilization substance G protein NusG, N-terminal domain	Thermus thermophilus [TaxId: 274]	view
d2k06a- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2k06a- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	N-utilization substance G protein NusG, N-terminal domain	N-utilization substance G protein NusG, N-terminal domain	Escherichia coli [TaxId: 562]	view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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-	-	-	-	-	S	I	E	W	Y	A	V	H	T	L	V	G	Q	E	E	K	A	K	A	N	L	E	K	R	I	K	A	F	G	L	Q	D	K	I	F	Q	V	L	I	P	T	E	E	V	V	E	L	R	E	G	G	K	K	E	V	V	R	K	K	L	F	P	G	Y	L	F	I	Q	M	D	L	G	D	E	E	E	P	N	E	A	W	E	V	V	R	G	T	P	G	I	T	G	F	V	G	A	G	M	-	R	P	V	P	L	S	P	D	E	V	R	H	I	L	E	V	S	G	L	L	G	-	-	-	-
M	S	E	A	P	K	K	R	W	Y	V	V	Q	A	F	S	G	F	E	G	R	V	A	T	S	L	R	E	H	I	K	L	H	N	M	E	D	L	F	G	E	V	M	V	P	T	E	E	V	V	E	-	I	R	G	G	Q	R	R	K	S	E	R	K	F	F	P	G	Y	V	L	V	Q	M	V	M	N	-	-	-	-	-	D	A	S	W	H	L	V	R	S	V	P	R	V	M	G	F	I	G	G	T	S	D	R	P	A	P	I	S	D	K	E	V	D	A	I	M	N	R	L	Q	Q	V	G	D	K	P	R

Member	Chain	UniProtKB	GO term
d1m1ha2	A	O67757	GO:0005829
d1m1ha2	A	O67757	GO:0005829
d1m1ha2	A	O67757	GO:0006353
d1m1ha2	A	O67757	GO:0006353
d1m1ha2	A	O67757	GO:0006354
d1m1ha2	A	O67757	GO:0006354
d1m1ha2	A	O67757	GO:0031564
d1m1ha2	A	O67757	GO:0031564
d1m1ha2	A	O67757	GO:0032784
d1m1ha2	A	O67757	GO:0032784
d1m1ha2	A	O67757	GO:0140673
d1m1ha2	A	O67757	GO:0140673
d1nz8a_	A	P35872	GO:0006354
d1nz8a_	A	P35872	GO:0140673

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-	-	-	-	-	S	I	E	W	Y	A	V	H	T	L	V	G	Q	E	E	K	A	K	A	N	L	E	K	R	I	K	A	F	G	L	Q	D	K	I	F	Q	V	L	I	P	T	E	E	V	V	E	L	R	E	G	G	K	K	E	V	V	R	K	K	L	F	P	G	Y	L	F	I	Q	M	D	L	G	D	E	E	E	P	N	E	A	W	E	V	V	R	G	T	P	G	I	T	G	F	V	G	A	G	M	-	R	P	V	P	L	S	P	D	E	V	R	H	I	L	E	V	S	G	L	L	G	-	-	-	-
M	S	E	A	P	K	K	R	W	Y	V	V	Q	A	F	S	G	F	E	G	R	V	A	T	S	L	R	E	H	I	K	L	H	N	M	E	D	L	F	G	E	V	M	V	P	T	E	E	V	V	E	-	I	R	G	G	Q	R	R	K	S	E	R	K	F	F	P	G	Y	V	L	V	Q	M	V	M	N	-	-	-	-	-	D	A	S	W	H	L	V	R	S	V	P	R	V	M	G	F	I	G	G	T	S	D	R	P	A	P	I	S	D	K	E	V	D	A	I	M	N	R	L	Q	Q	V	G	D	K	P	R

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-	-	-	-	-	S	I	E	W	Y	A	V	H	T	L	V	G	Q	E	E	K	A	K	A	N	L	E	K	R	I	K	A	F	G	L	Q	D	K	I	F	Q	V	L	I	P	T	E	E	V	V	E	L	R	E	G	G	K	K	E	V	V	R	K	K	L	F	P	G	Y	L	F	I	Q	M	D	L	G	D	E	E	E	P	N	E	A	W	E	V	V	R	G	T	P	G	I	T	G	F	V	G	A	G	M	-	R	P	V	P	L	S	P	D	E	V	R	H	I	L	E	V	S	G	L	L	G	-	-	-	-
M	S	E	A	P	K	K	R	W	Y	V	V	Q	A	F	S	G	F	E	G	R	V	A	T	S	L	R	E	H	I	K	L	H	N	M	E	D	L	F	G	E	V	M	V	P	T	E	E	V	V	E	-	I	R	G	G	Q	R	R	K	S	E	R	K	F	F	P	G	Y	V	L	V	Q	M	V	M	N	-	-	-	-	-	D	A	S	W	H	L	V	R	S	V	P	R	V	M	G	F	I	G	G	T	S	D	R	P	A	P	I	S	D	K	E	V	D	A	I	M	N	R	L	Q	Q	V	G	D	K	P	R

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Q	V	Q	E	L	E	K	K	W	Y	A	L	Q	V	E	P	G	K	E	N	E	A	K	E	N	L	L	K	V	L	E	L	E	G	L	K	D	L	V	D	E	V	I	V	P	A	N	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	K	I	F	P	G	Y	I	L	I	K	A	H	M	N	-	-	-	-	-	D	K	L	L	M	A	I	E	K	T	P	H	V	F	R	P	V	M	V	G	-	G	K	P	V	P	L	K	E	E	E	V	Q	N	I	L	N	Q	I	K	R	-	-	-	-	-	-
-	-	-	-	-	S	I	E	W	Y	A	V	H	T	L	V	G	Q	E	E	K	A	K	A	N	L	E	K	R	I	K	A	F	G	L	Q	D	K	I	F	Q	V	L	I	P	T	E	E	V	V	E	L	R	E	G	G	K	K	E	V	V	R	K	K	L	F	P	G	Y	L	F	I	Q	M	D	L	G	D	E	E	E	P	N	E	A	W	E	V	V	R	G	T	P	G	I	T	G	F	V	G	A	G	M	-	R	P	V	P	L	S	P	D	E	V	R	H	I	L	E	V	S	G	L	L	G	-	-	-	-
M	S	E	A	P	K	K	R	W	Y	V	V	Q	A	F	S	G	F	E	G	R	V	A	T	S	L	R	E	H	I	K	L	H	N	M	E	D	L	F	G	E	V	M	V	P	T	E	E	V	V	E	-	I	R	G	G	Q	R	R	K	S	E	R	K	F	F	P	G	Y	V	L	V	Q	M	V	M	N	-	-	-	-	-	D	A	S	W	H	L	V	R	S	V	P	R	V	M	G	F	I	G	G	T	S	D	R	P	A	P	I	S	D	K	E	V	D	A	I	M	N	R	L	Q	Q	V	G	D	K	P	R