PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1iw5a1  (  28 )    m---elsadyLrekLrqdleAehveVedttlnrcatsfrVlVvsakFegk
d1ny8a1  (   1 )    miedpmenneiqsvlmnalslqevhvsgd-----gshFqviAvgelFdgm
                            aaaaaaaaaa    bbbbb         bbbbbbb       

                             60        70        80        90   
d1iw5a1  (  75 )    pllqrhrlVnecLaeelphIh--aFeqkTltpeqwtrqrr---e
d1ny8a1  (  46 )    srvkKqqtvygplmeyiadnrihavsikAytpaewardrklngf
                     aaaaaaaaa             bbbbbb  aaaaaa

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d1iw5a1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1iw5a1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	BolA-like	Mus musculus		view
d1ny8a1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1ny8a1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Hypothetical protein YrbA	BolA-like	Escherichia coli [TaxId: 562]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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M	-	-	-	E	L	S	A	D	Y	L	R	E	K	L	R	Q	D	L	E	A	E	H	V	E	V	E	D	T	T	L	N	R	C	A	T	S	F	R	V	L	V	V	S	A	K	F	E	G	K	P	L	L	Q	R	H	R	L	V	N	E	C	L	A	E	E	L	P	H	I	H	-	-	A	F	E	Q	K	T	L	T	P	E	Q	W	T	R	Q	R	R	-	-	-	E
M	I	E	D	P	M	E	N	N	E	I	Q	S	V	L	M	N	A	L	S	L	Q	E	V	H	V	S	G	D	-	-	-	-	-	G	S	H	F	Q	V	I	A	V	G	E	L	F	D	G	M	S	R	V	K	K	Q	Q	T	V	Y	G	P	L	M	E	Y	I	A	D	N	R	I	H	A	V	S	I	K	A	Y	T	P	A	E	W	A	R	D	R	K	L	N	G	F

Member	Chain	UniProtKB	GO term

									10										20										30										40										50										60										70										80										90
M	-	-	-	E	L	S	A	D	Y	L	R	E	K	L	R	Q	D	L	E	A	E	H	V	E	V	E	D	T	T	L	N	R	C	A	T	S	F	R	V	L	V	V	S	A	K	F	E	G	K	P	L	L	Q	R	H	R	L	V	N	E	C	L	A	E	E	L	P	H	I	H	-	-	A	F	E	Q	K	T	L	T	P	E	Q	W	T	R	Q	R	R	-	-	-	E
M	I	E	D	P	M	E	N	N	E	I	Q	S	V	L	M	N	A	L	S	L	Q	E	V	H	V	S	G	D	-	-	-	-	-	G	S	H	F	Q	V	I	A	V	G	E	L	F	D	G	M	S	R	V	K	K	Q	Q	T	V	Y	G	P	L	M	E	Y	I	A	D	N	R	I	H	A	V	S	I	K	A	Y	T	P	A	E	W	A	R	D	R	K	L	N	G	F

									10										20										30										40										50										60										70										80										90
M	-	-	-	E	L	S	A	D	Y	L	R	E	K	L	R	Q	D	L	E	A	E	H	V	E	V	E	D	T	T	L	N	R	C	A	T	S	F	R	V	L	V	V	S	A	K	F	E	G	K	P	L	L	Q	R	H	R	L	V	N	E	C	L	A	E	E	L	P	H	I	H	-	-	A	F	E	Q	K	T	L	T	P	E	Q	W	T	R	Q	R	R	-	-	-	E
M	I	E	D	P	M	E	N	N	E	I	Q	S	V	L	M	N	A	L	S	L	Q	E	V	H	V	S	G	D	-	-	-	-	-	G	S	H	F	Q	V	I	A	V	G	E	L	F	D	G	M	S	R	V	K	K	Q	Q	T	V	Y	G	P	L	M	E	Y	I	A	D	N	R	I	H	A	V	S	I	K	A	Y	T	P	A	E	W	A	R	D	R	K	L	N	G	F

									10										20										30										40										50										60										70										80										90
M	-	-	-	E	L	S	A	D	Y	L	R	E	K	L	R	Q	D	L	E	A	E	H	V	E	V	E	D	T	T	L	N	R	C	A	T	S	F	R	V	L	V	V	S	A	K	F	E	G	K	P	L	L	Q	R	H	R	L	V	N	E	C	L	A	E	E	L	P	H	I	H	-	-	A	F	E	Q	K	T	L	T	P	E	Q	W	T	R	Q	R	R	-	-	-	E
M	I	E	D	P	M	E	N	N	E	I	Q	S	V	L	M	N	A	L	S	L	Q	E	V	H	V	S	G	D	-	-	-	-	-	G	S	H	F	Q	V	I	A	V	G	E	L	F	D	G	M	S	R	V	K	K	Q	Q	T	V	Y	G	P	L	M	E	Y	I	A	D	N	R	I	H	A	V	S	I	K	A	Y	T	P	A	E	W	A	R	D	R	K	L	N	G	F