Superfamily : 82649 [ SufE/NifU ]
Class : Alpha and beta proteins (a+b)
Fold : SufE/NifU
# of Members : 9
Superposed Structure
solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x
beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x
hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x
 
                             10        20        30        40        50  
d2qq4a-  (   1 )                            msvldelyreilldHyqsprnfgvLp
d3a7ra2  ( 247 )                                                     q
d3g0ma-  (   1 )             maaLpdkekLlrnFtrcanweekylyIieLGq--rLaeLnp
d4lw4c-  (   3 )    npqfagHpFgttv-taetLrntFapltqwedKyrqLimlGk--qLpaLpd
d5idha2  ( 248 )                                                     k
d5ij6a2  ( 250 )                                                     e
d5ufta1  (   1 )                               middiynrIl-fagnmerig-la
d6a6fa1  (   1 )                                 miysefImdySklkkfhgkie
d7c8na-  (   1 )                            miqqtg-yskkVmeHfmnprnvgvid
                                                                      

                             60        70        80        90        100 
d2qq4a-  (  27 )    qatkqaggmnpscgDqVeVMVllegdtIadIrFqgqgcaistASASLMTe
d3a7ra2  ( 248 )    apafshlLderftwggVeLhFdVekghItrAqVftdSl--npaPLeaLag
d3g0ma-  (  40 )    qDrnp-ntIhg-CqsqVwIVMrrnangiIeLqGdSd-aaiVkGLMAVVFI
d4lw4c-  (  50 )    elkaqAkeiag-cenrVwLgytvaengkMHFFGdSe-grivrGLLAVLLT
d5idha2  ( 249 )    spafnlerrhrfpigsIeMkMnvadgaIqeIkIfgdff--glgeikdVed
d5ij6a2  ( 251 )    apkftikkeekfkggiVdArLTvekgkIieLtIygdyf--akketteIva
d5ufta1  (  25 )    epdavAtvs--kcgstVtVyLkMrdgvVtdFaHeV-AcaLGqASSSVMAr
d6a6fa1  (  22 )    nAhkveegknlscgDeVtLyFlfdgdkIvdVkFeghgcaISqASTNVMIe
d7c8na-  (  26 )    dpdGygkvgNpvcgdlMeIfIkVgdekIedIkFrTfGcgAAiATSSMITe
                         bbb        bbbbbbbb  bbbbbbbbb       aaaaaaaa

                             110       120       130       140       150 
d2qq4a-  (  77 )    aVkgkk--vaeAlelSrkFqaMVvegappdp-tLgdLlALqgVaklpa-r
d3a7ra2  ( 296 )    rLqgclyrAdmLqqeCe-----------------aLlvdfpeq-------
d3g0ma-  (  88 )    LYhqmt--aqdIvhfd----------------vrpwfekMaLaqhLtpsr
d4lw4c-  (  98 )    aVegkt--aaeLqaqs----------------plalFdeLgLraqLsaSr
d5idha2  ( 297 )    iLtgvkydkasLeeaId-----------------qIdVkkyFg-------
d5ij6a2  ( 299 )    aLlgvdyqyssIwqaLa-----------------afnFedYFv-------
d5ufta1  (  75 )    nVigAt--adeLraardaMyrMLkengpaPegrFadMkyFepVrdy-a-r
d6a6fa1  (  72 )    qIigkt--kqeAleMMkNAenMMl-gkefdenvLgpIinFydVknypm-r
d7c8na-  (  76 )    mArgks--LeeAmritrndva----------------daLdgLpp--q-k
                    aa      aaaaaa                                    

                             160       170 
d2qq4a-  ( 123 )    vkcATLAWhALeeALr       
d3a7ra2  ( 322 )    ekeLreLSawMAgaVr       
d3g0ma-  ( 120 )    sqGLeaMIraIrakAatls    
d4lw4c-  ( 130 )    sqgLnaLseaIiaAAkqv     
d5idha2  ( 323 )    nIekedLlgLIy           
d5ij6a2  ( 325 )    nItkeeFVhlLvd          
d5ufta1  ( 122 )    haSTlLTFdAVadCIrqie---a
d6a6fa1  ( 118 )    vkCFllPWkTLeiALk       
d7c8na-  ( 105 )    macSnlAAdALhaAIndylskkq
                     aaaaaaaaaaaaaa
 

 

Domain IDNameFamilySourceDomainSTRING-DB
automated matchesautomated matchesThermus thermophilus [TaxId: 274]view
Two-domain LplA, C-terminal domainSP1160 C-terminal domain-likeEscherichia coli [TaxId: 562]view
automated matchesSufE-likeSalmonella typhimurium [TaxId: 99287]view
automated matchesSufE-likeEscherichia coli [TaxId: 714962]view
automated matchesautomated matchesEnterococcus faecalis [TaxId: 226185]view
automated matchesautomated matchesEnterococcus faecalis [TaxId: 226185]view
automated matchesautomated matchesBrucella abortus [TaxId: 359391]view
automated matchesautomated matchesFervidobacterium islandicum [TaxId: 2423]view
automated matchesautomated matchesMethanothrix thermoacetophila [TaxId: 2224]view

 

No outliers

Created with Raphaëld3a7ra2d5ij6a2d5idha2d4lw4c-d3g0ma-d7c8na-d5ufta1d6a6fa1d2qq4a-
FeatureDownload
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

 

10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170
- - - - - - - - - - - - - - - - - - - - - - - - M S V L D E L Y R E I L L D H Y Q S P R N F G V L P Q A T K Q A G G M N P S C G D Q V E V M V L L E G D T I A D I R F Q G Q G C A I S T A S A S L M T E A V K G K K - - V A E A L E L S R K F Q A M V V E G A P P D P - T L G D L L A L Q G V A K L P A - R V K C A T L A W H A L E E A L R - - - - - - -
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Q A P A F S H L L D E R F T W G G V E L H F D V E K G H I T R A Q V F T D S L - - N P A P L E A L A G R L Q G C L Y R A D M L Q Q E C E - - - - - - - - - - - - - - - - - A L L V D F P E Q - - - - - - - E K E L R E L S A W M A G A V R - - - - - - -
- - - - - - - - - M A A L P D K E K L L R N F T R C A N W E E K Y L Y I I E L G Q - - R L A E L N P Q D R N P - N T I H G - C Q S Q V W I V M R R N A N G I I E L Q G D S D - A A I V K G L M A V V F I L Y H Q M T - - A Q D I V H F D - - - - - - - - - - - - - - - - V R P W F E K M A L A Q H L T P S R S Q G L E A M I R A I R A K A A T L S - - - -
N P Q F A G H P F G T T V - T A E T L R N T F A P L T Q W E D K Y R Q L I M L G K - - Q L P A L P D E L K A Q A K E I A G - C E N R V W L G Y T V A E N G K M H F F G D S E - G R I V R G L L A V L L T A V E G K T - - A A E L Q A Q S - - - - - - - - - - - - - - - - P L A L F D E L G L R A Q L S A S R S Q G L N A L S E A I I A A A K Q V - - - - -
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - K S P A F N L E R R H R F P I G S I E M K M N V A D G A I Q E I K I F G D F F - - G L G E I K D V E D I L T G V K Y D K A S L E E A I D - - - - - - - - - - - - - - - - - Q I D V K K Y F G - - - - - - - N I E K E D L L G L I Y - - - - - - - - - - -
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - E A P K F T I K K E E K F K G G I V D A R L T V E K G K I I E L T I Y G D Y F - - A K K E T T E I V A A L L G V D Y Q Y S S I W Q A L A - - - - - - - - - - - - - - - - - A F N F E D Y F V - - - - - - - N I T K E E F V H L L V D - - - - - - - - - -
- - - - - - - - - - - - - - - - - - - - - - - - - - - M I D D I Y N R I L - F A G N M E R I G - L A E P D A V A T V S - - K C G S T V T V Y L K M R D G V V T D F A H E V - A C A L G Q A S S S V M A R N V I G A T - - A D E L R A A R D A M Y R M L K E N G P A P E G R F A D M K Y F E P V R D Y - A - R H A S T L L T F D A V A D C I R Q I E - - - A
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - M I Y S E F I M D Y S K L K K F H G K I E N A H K V E E G K N L S C G D E V T L Y F L F D G D K I V D V K F E G H G C A I S Q A S T N V M I E Q I I G K T - - K Q E A L E M M K N A E N M M L - G K E F D E N V L G P I I N F Y D V K N Y P M - R V K C F L L P W K T L E I A L K - - - - - - -
- - - - - - - - - - - - - - - - - - - - - - - - M I Q Q T G - Y S K K V M E H F M N P R N V G V I D D P D G Y G K V G N P V C G D L M E I F I K V G D E K I E D I K F R T F G C G A A I A T S S M I T E M A R G K S - - L E E A M R I T R N D V A - - - - - - - - - - - - - - - - D A L D G L P P - - Q - K M A C S N L A A D A L H A A I N D Y L S K K Q

 

 

 

 

 

 
Contact: Prof. R. Sowdhamini - mini@ncbs.res.in