PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1mbya-  ( 845 )                                     svfvknvGwatqltsga
d3rq7a1  ( 373 )    hlsdmlqqlhsvnaskpserglvrqeeaedpacipifwvSkwvdysdkyG
d3rq7a2  ( 508 )                                     lpy--lrtwfrtr--sA
                                                          bbbbbb     b

                             60        70        80        90        100 
d1mbya-  ( 862 )    vwvqfndgsqlvm------qagv----ssisytspdgqttrygen----e
d3rq7a1  ( 423 )    lGyqlCdnSvGvlFn-dstrlilyndgdslqyierdgtesyltvs-----
d3rq7a2  ( 521 )    iilhlsngsvqinFfqdhtklilcplmaavtyidekrdfrtyrlslleey
                    bbbbb    bbbb      bbb      bbbbb     bbbbb       

                             110       120       130  
d1mbya-  ( 898 )    klpeyIkqklql------------lssillmfsn
d3rq7a1  ( 467 )    shpnslmkkitllkyFrnyMsehllkagapr   
d3rq7a2  ( 571 )    gcckelasrlryArtmvdkllssr          
                          aaaa

Domains
Outliers

Domain ID	Name	Family	Source	STRING-DB
d1mbya- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1mbya- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Serine/threonine-protein kinase Sak C-terminal domain	Swapped Polo-box domain	Mouse (Mus musculus) [TaxId: 10090]	view
d3rq7a1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d3rq7a1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Serine/threonine-protein kinase plk C-terminal domain	Polo-box duplicated region	Human (Homo sapiens) [TaxId: 9606]	view
d3rq7a2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d3rq7a2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Serine/threonine-protein kinase plk C-terminal domain	Polo-box duplicated region	Human (Homo sapiens) [TaxId: 9606]	view

Domain ID	Name
d5lhxa-	5lhx A:

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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H	L	S	D	M	L	Q	Q	L	H	S	V	N	A	S	K	P	S	E	R	G	L	V	R	Q	E	E	A	E	D	P	A	C	I	P	I	F	W	V	S	K	W	V	D	Y	S	D	K	Y	G	L	G	Y	Q	L	C	D	N	S	V	G	V	L	F	N	-	D	S	T	R	L	I	L	Y	N	D	G	D	S	L	Q	Y	I	E	R	D	G	T	E	S	Y	L	T	V	S	-	-	-	-	-	S	H	P	N	S	L	M	K	K	I	T	L	L	K	Y	F	R	N	Y	M	S	E	H	L	L	K	A	G	A	P	R	-	-	-
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Member	Chain	UniProtKB	GO term

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H	L	S	D	M	L	Q	Q	L	H	S	V	N	A	S	K	P	S	E	R	G	L	V	R	Q	E	E	A	E	D	P	A	C	I	P	I	F	W	V	S	K	W	V	D	Y	S	D	K	Y	G	L	G	Y	Q	L	C	D	N	S	V	G	V	L	F	N	-	D	S	T	R	L	I	L	Y	N	D	G	D	S	L	Q	Y	I	E	R	D	G	T	E	S	Y	L	T	V	S	-	-	-	-	-	S	H	P	N	S	L	M	K	K	I	T	L	L	K	Y	F	R	N	Y	M	S	E	H	L	L	K	A	G	A	P	R	-	-	-
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H	L	S	D	M	L	Q	Q	L	H	S	V	N	A	S	K	P	S	E	R	G	L	V	R	Q	E	E	A	E	D	P	A	C	I	P	I	F	W	V	S	K	W	V	D	Y	S	D	K	Y	G	L	G	Y	Q	L	C	D	N	S	V	G	V	L	F	N	-	D	S	T	R	L	I	L	Y	N	D	G	D	S	L	Q	Y	I	E	R	D	G	T	E	S	Y	L	T	V	S	-	-	-	-	-	S	H	P	N	S	L	M	K	K	I	T	L	L	K	Y	F	R	N	Y	M	S	E	H	L	L	K	A	G	A	P	R	-	-	-
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