PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1j8ba-  (   7 )      lgglkqaqqqekqkq-eeiaq-levtGesgaglVkItInGahncrrid
d1ybxa-  (  15 )        nlvqaqkqrderv--eelk--tveAsagggAVtVvAtgk-di-eit
d3f42a1  (   2 )    dfsqlgglldgkkefsqleeknkdtihtsksggg-VsVsFnglgelvdlq
                                             bbbbb      bbbbb       bb

                             60        70        80        90  
d1j8ba-  (  57 )    idpsle--ddkeledliaaAfndAvrrAeelqkekasvtag
d1ybxa-  (  63 )    ikpevvdpddvelqdlilaAvneAlrkAde-vtaeiskit 
d3f42a1  (  53 )    iddsll--edkeaqiyl-sAlndGykaveenrknlaf-nlg
                                       aaaaaaaaaa   aa

Domains
Outliers

Domain ID	Name	Family	Source	STRING-DB
d1j8ba- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1j8ba- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Hypothetical protein HI0442	YbaB-like	Haemophilus influenzae [TaxId: 727]	view
d1ybxa- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1ybxa- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Clostridium thermocellum [TaxId: 1515]	view
d3f42a1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d3f42a1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Helicobacter pylori [TaxId: 210]	view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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Member	Chain	UniProtKB	GO term
d1j8ba_	A	P44711	GO:0003677
d1j8ba_	A	P44711	GO:0005737
d1j8ba_	A	P44711	GO:0005829
d1j8ba_	A	P44711	GO:0009295
d1j8ba_	A	P44711	GO:0043590

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D	F	S	Q	L	G	G	L	L	D	G	K	K	E	F	S	Q	L	E	E	K	N	K	D	T	I	H	T	S	K	S	G	G	G	-	V	S	V	S	F	N	G	L	G	E	L	V	D	L	Q	I	D	D	S	L	L	-	-	E	D	K	E	A	Q	I	Y	L	-	S	A	L	N	D	G	Y	K	A	V	E	E	N	R	K	N	L	A	F	-	N	L	G

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D	F	S	Q	L	G	G	L	L	D	G	K	K	E	F	S	Q	L	E	E	K	N	K	D	T	I	H	T	S	K	S	G	G	G	-	V	S	V	S	F	N	G	L	G	E	L	V	D	L	Q	I	D	D	S	L	L	-	-	E	D	K	E	A	Q	I	Y	L	-	S	A	L	N	D	G	Y	K	A	V	E	E	N	R	K	N	L	A	F	-	N	L	G

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