PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d3bofa2  (   1 )    mrnrreVslLserVLLLDGaygtEFmkygydd---lpEeLNikApdVVlk
d4m3pa-  (  10 )    kkgileRln-ageiviGDGgfvFAlekrgyvkAgpwtPeAAvehpeavrq
                       aaaa       bb     aaaa              aaaa aaaaaa

                             60        70        80        90        100 
d3bofa2  (  49 )    VHrsYieSgSdVILTNTfGATrMkLrkhgledkldpIVrnAVrIArrAAg
d4m3pa-  (  59 )    lHreFlrAgSnvMqtFtfys-------------gqevneaACdiArqvAd
                    aaaaaa     bbb                    aaaaaaaaaaaaaaa 

                             110       120       130       140       150 
d3bofa2  ( 100 )    ---kLVFGDIGpTgelpyplgsTlfeeFyeNFreTVeiMveegVDGIIFE
d4m3pa-  ( 113 )    egdAlvAGgvsqtp--------ksetevkkvFlqqlevFmkknvdFliAe
                        bbbbbb              aaaaaaaaaaaaaaaaa    bbbbb

                             160       170       180       190       200 
d3bofa2  ( 147 )    tFsdilELkAAVlAArevsrdvFLIAHMtFdekgrSltgTdPanFAitFd
d4m3pa-  ( 160 )    yFehveeAvwAvetliaS--gkpvAAtMCiGpe-GDlhgvpPgeCAvrlv
                    bb  aaaaaaaaaaaa       bbbbb             aaaaaaaaa

                             210       220       230       240       250 
d3bofa2  ( 197 )    eldIdALGINcsLGPeeIlpiFqeLSqyT-----dkfLVVEPNAgkpive
d4m3pa-  ( 207 )    kagAsiiGvnCHFDptiSlktvklMkegleaaqlkahlMSqPlAYhtpdC
                         bbbbb    aaaaaaaaaaaaa         bbbbb         

                             260       270       280       290       300 
d3bofa2  ( 242 )    n----------gktv--yplkphdFAvhIdsYyelGVNIFGGccgTtpeh
d4m3pa-  ( 257 )    nkqGFidlpefpfgleprvAtrwdiqkYAreAynlgvrYiGGccgFepyH
                                         aaaaa  aaaaaa    bb       aaa

                             310       320       330       340       350 
d3bofa2  ( 280 )    VklFrkvLg---nrkplrkkkri                           
d4m3pa-  ( 307 )    irAiAeelapergflPpaSekhgswgsgldmhtkpwvrarArkeywenlr
                    aaaaaaa                                           

                             360       370       380       390   
d3bofa2                                                          
d4m3pa-  ( 357 )    iasgrpynpsmskpdgwgvtkgtaelmqqkeatteqqlkelfekq

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d3bofa2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d3bofa2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Cobalamin-dependent methionine synthase MetH, N-terminal domain	Homocysteine S-methyltransferase	Thermotoga maritima [TaxId: 2336]		view
d4m3pa- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d4m3pa- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Betaine-homocysteine S-methyltransferase	Homocysteine S-methyltransferase	Human (Homo sapiens) [TaxId: 9606]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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Member	Chain	UniProtKB	GO term
d3bofa2	A	Q9WYA5	GO:0042558
d3bofa2	A	Q9WYA5	GO:0044237
d3bofa2	A	Q9WYA5	GO:0042558
d3bofa2	A	Q9WYA5	GO:0044237

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M	R	N	R	R	E	V	S	L	L	S	E	R	V	L	L	L	D	G	A	Y	G	T	E	F	M	K	Y	G	Y	D	D	-	-	-	L	P	E	E	L	N	I	K	A	P	D	V	V	L	K	V	H	R	S	Y	I	E	S	G	S	D	V	I	L	T	N	T	F	G	A	T	R	M	K	L	R	K	H	G	L	E	D	K	L	D	P	I	V	R	N	A	V	R	I	A	R	R	A	A	G	-	-	-	K	L	V	F	G	D	I	G	P	T	G	E	L	P	Y	P	L	G	S	T	L	F	E	E	F	Y	E	N	F	R	E	T	V	E	I	M	V	E	E	G	V	D	G	I	I	F	E	T	F	S	D	I	L	E	L	K	A	A	V	L	A	A	R	E	V	S	R	D	V	F	L	I	A	H	M	T	F	D	E	K	G	R	S	L	T	G	T	D	P	A	N	F	A	I	T	F	D	E	L	D	I	D	A	L	G	I	N	C	S	L	G	P	E	E	I	L	P	I	F	Q	E	L	S	Q	Y	T	-	-	-	-	-	D	K	F	L	V	V	E	P	N	A	G	K	P	I	V	E	N	-	-	-	-	-	-	-	-	-	-	G	K	T	V	-	-	Y	P	L	K	P	H	D	F	A	V	H	I	D	S	Y	Y	E	L	G	V	N	I	F	G	G	C	C	G	T	T	P	E	H	V	K	L	F	R	K	V	L	G	-	-	-	N	R	K	P	L	R	K	K	K	R	I	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
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