PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1o75a1  ( 207 )    esphDLvvdtvgtgyhsrfgsdaEASVmLkradgseLshreFidYVmnFn
d1o75a2  ( 333 )      pkyegnidIgLk-------gkvLtIggAd-----------aetLmdA-
                             bbb          bbbbbb                    b 

                             60        70        80        90        100 
d1o75a1  ( 257 )    tVrYdyygddasytnlmasygTkhsaDSWwktgrvprISCGInygfdrFk
d1o75a2  ( 362 )    aVdVfad--------gqpklvsd----qaVslg-qnvLsadFtp------
                    bbbbbb                     bb       bbbbbb        

                             110       120    
d1o75a1  ( 307 )    gSgpgyYrLtLiAngYrdVvAdvrfl
d1o75a2  ( 393 )    ---gteYTVeVrFkefgsvrakvvA 
                         bbbbbbb      bbbbbb

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d1o75a1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1o75a1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Tp47 lipoprotein, middle and C-terminal domains	Tp47 lipoprotein, middle and C-terminal domains	Treponema pallidum [TaxId: 160]		view
d1o75a2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1o75a2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Tp47 lipoprotein, middle and C-terminal domains	Tp47 lipoprotein, middle and C-terminal domains	Treponema pallidum [TaxId: 160]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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E	S	P	H	D	L	V	V	D	T	V	G	T	G	Y	H	S	R	F	G	S	D	A	E	A	S	V	M	L	K	R	A	D	G	S	E	L	S	H	R	E	F	I	D	Y	V	M	N	F	N	T	V	R	Y	D	Y	Y	G	D	D	A	S	Y	T	N	L	M	A	S	Y	G	T	K	H	S	A	D	S	W	W	K	T	G	R	V	P	R	I	S	C	G	I	N	Y	G	F	D	R	F	K	G	S	G	P	G	Y	Y	R	L	T	L	I	A	N	G	Y	R	D	V	V	A	D	V	R	F	L
-	-	P	K	Y	E	G	N	I	D	I	G	L	K	-	-	-	-	-	-	-	G	K	V	L	T	I	G	G	A	D	-	-	-	-	-	-	-	-	-	-	-	A	E	T	L	M	D	A	-	A	V	D	V	F	A	D	-	-	-	-	-	-	-	-	G	Q	P	K	L	V	S	D	-	-	-	-	Q	A	V	S	L	G	-	Q	N	V	L	S	A	D	F	T	P	-	-	-	-	-	-	-	-	-	G	T	E	Y	T	V	E	V	R	F	K	E	F	G	S	V	R	A	K	V	V	A	-

Member	Chain	UniProtKB	GO term
d1o75a1	A	P29723	GO:0005886
d1o75a1	A	P29723	GO:0006508
d1o75a1	A	P29723	GO:0008233
d1o75a1	A	P29723	GO:0005886
d1o75a1	A	P29723	GO:0006508
d1o75a1	A	P29723	GO:0008233
d1o75a2	A	P29723	GO:0005886
d1o75a2	A	P29723	GO:0006508
d1o75a2	A	P29723	GO:0008233
d1o75a2	A	P29723	GO:0005886
d1o75a2	A	P29723	GO:0006508
d1o75a2	A	P29723	GO:0008233

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E	S	P	H	D	L	V	V	D	T	V	G	T	G	Y	H	S	R	F	G	S	D	A	E	A	S	V	M	L	K	R	A	D	G	S	E	L	S	H	R	E	F	I	D	Y	V	M	N	F	N	T	V	R	Y	D	Y	Y	G	D	D	A	S	Y	T	N	L	M	A	S	Y	G	T	K	H	S	A	D	S	W	W	K	T	G	R	V	P	R	I	S	C	G	I	N	Y	G	F	D	R	F	K	G	S	G	P	G	Y	Y	R	L	T	L	I	A	N	G	Y	R	D	V	V	A	D	V	R	F	L
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E	S	P	H	D	L	V	V	D	T	V	G	T	G	Y	H	S	R	F	G	S	D	A	E	A	S	V	M	L	K	R	A	D	G	S	E	L	S	H	R	E	F	I	D	Y	V	M	N	F	N	T	V	R	Y	D	Y	Y	G	D	D	A	S	Y	T	N	L	M	A	S	Y	G	T	K	H	S	A	D	S	W	W	K	T	G	R	V	P	R	I	S	C	G	I	N	Y	G	F	D	R	F	K	G	S	G	P	G	Y	Y	R	L	T	L	I	A	N	G	Y	R	D	V	V	A	D	V	R	F	L
-	-	P	K	Y	E	G	N	I	D	I	G	L	K	-	-	-	-	-	-	-	G	K	V	L	T	I	G	G	A	D	-	-	-	-	-	-	-	-	-	-	-	A	E	T	L	M	D	A	-	A	V	D	V	F	A	D	-	-	-	-	-	-	-	-	G	Q	P	K	L	V	S	D	-	-	-	-	Q	A	V	S	L	G	-	Q	N	V	L	S	A	D	F	T	P	-	-	-	-	-	-	-	-	-	G	T	E	Y	T	V	E	V	R	F	K	E	F	G	S	V	R	A	K	V	V	A	-

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-	-	P	K	Y	E	G	N	I	D	I	G	L	K	-	-	-	-	-	-	-	G	K	V	L	T	I	G	G	A	D	-	-	-	-	-	-	-	-	-	-	-	A	E	T	L	M	D	A	-	A	V	D	V	F	A	D	-	-	-	-	-	-	-	-	G	Q	P	K	L	V	S	D	-	-	-	-	Q	A	V	S	L	G	-	Q	N	V	L	S	A	D	F	T	P	-	-	-	-	-	-	-	-	-	G	T	E	Y	T	V	E	V	R	F	K	E	F	G	S	V	R	A	K	V	V	A	-