PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1k6ka-  (   1 )       mlnqeLelslnmAfarArehrHefMtVeHLLLaLLsN--psAreALe
d1khya-  (   4 )      drltnkFqlAladAqslAlghdNqfIepLHL-SALLnqegGsVsplLt
d1qvra1  (   4 )      erWTqaArealaqAqvlAqrmkHqaIdLPHLWavlLkderslAwrLLe
d6azya1  (   2 )    ssmqftdkAteTlnaAakyAaensHvqLHPSHVAVvMLdeenSlFrsILe
                          aaaaaaaaaaaaaaaa    bb aaaaaaaa      aaaaaaa

                             60        70        80        90        100 
d1k6ka-  (  46 )    acsVdlvaLrqeLeafIeqtTpvlpaseeerdTqptlsFqrVlqrAvfhv
d1khya-  (  52 )    sAgInagqLrtdInqALn-rlpqv---------qpsqdLvrVlnlCdklA
d1qvra1  (  52 )    kAgadPkalkelqerela-rlpkve--gaevGqyltsrLsgAlnrAegLm
d6azya1  (  52 )    kAgGdVvsIergFkkiMv-rqpsqd------emghspeLakLlhyAhehm
                    a    aaaaaaaaaaaaa               bb aaaaaaaaaaaaaa

                             110       120       130       140       150 
d1k6ka-  (  96 )    qssgrneVtGanVLvAIfseqesqAAyLLrkheVsrldVvnfish--g  
d1khya-  (  99 )    qkrgdnfIsSeLFVLAALesr-gtlAdiLkaagAttanItqAIeq     
d1qvra1  (  99 )    eelkdryVAvDTLVLALAeatp---------gLpgleaLkgalkelrggr
d6azya1  (  99 )    kkqrdlyIaqdHLILALadLp--sMaqvLkeGgVtkksLenAVthvrg  
                    a        aaaaaaaa      aaaaaaaa    aaaaaaaaa      

                             
d1k6ka-                      
d1khya-                      
d1qvra1  ( 140 )    tvqtehAes
d6azya1

Domains
Outliers

Domain ID	Name	Family	Source	STRING-DB
d1k6ka- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1k6ka- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	N-terminal, ClpS-binding domain of ClpA, an Hsp100 chaperone	Double Clp-N motif	Escherichia coli [TaxId: 562]	view
d1khya- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1khya- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	N-terminal domain of ClpB (heat shock protein F84.1)	Double Clp-N motif	Escherichia coli [TaxId: 562]	view
d1qvra1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1qvra1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	N-terminal domain of ClpB (heat shock protein F84.1)	Double Clp-N motif	Thermus thermophilus [TaxId: 274]	view
d6azya1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d6azya1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Calcarisporiella thermophila [TaxId: 911321]	view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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S	S	M	Q	F	T	D	K	A	T	E	T	L	N	A	A	A	K	Y	A	A	E	N	S	H	V	Q	L	H	P	S	H	V	A	V	V	M	L	D	E	E	N	S	L	F	R	S	I	L	E	K	A	G	G	D	V	V	S	I	E	R	G	F	K	K	I	M	V	-	R	Q	P	S	Q	D	-	-	-	-	-	-	E	M	G	H	S	P	E	L	A	K	L	L	H	Y	A	H	E	H	M	K	K	Q	R	D	L	Y	I	A	Q	D	H	L	I	L	A	L	A	D	L	P	-	-	S	M	A	Q	V	L	K	E	G	G	V	T	K	K	S	L	E	N	A	V	T	H	V	R	G	-	-	-	-	-	-	-	-	-	-	-

Member	Chain	UniProtKB	GO term
d1qvra1	A	Q9RA63	GO:0005515
d1qvra1	A	Q9RA63	GO:0005524
d1qvra1	A	Q9RA63	GO:0005737
d1qvra1	A	Q9RA63	GO:0009408
d1qvra1	A	Q9RA63	GO:0016887
d1qvra1	A	Q9RA63	GO:0034605
d1qvra1	A	Q9RA63	GO:0042026
d1qvra1	A	Q9RA63	GO:0042802

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