PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1klxa-  (   3 )                                                   ggg
d1ouva1  (  28 )    dpkelvglGaksykekdftqAkkyFekAÇdlkensGÇfnLGvLyyqgqgv
                                                                      

                             60        70        80        90        100 
d1klxa-  (   6 )    tvkkdlkkaiqyyvkaÇElnemfGÇlsLvsN--sqI----nkqkLfqyLs
d1ouva1  (  78 )    e--knlkkAAsfYakAÇdlnysnGÇhlLGnLyysgqgvsqntnkAlqyYs
                         aaaaaaaaaaaaa     aaaaaa            aaaaaaaaa

                             110       120       130       140       150 
d1klxa-  (  50 )    kAÇelnSGnGÇrfLGdfyenGkyvkkdlrkAAqyYskAçglndqdGÇlil
d1ouva1  ( 126 )    kAÇdlkyaeGÇasLGgiyhdGkvvtrdfkkAveyFtkAçdlndgdGÇtiL
                    aaaa   aaaaaaaaaaaaa       aaaaaaaaaaaaa   aaaaaaa

                             160       170       180       190       200 
d1klxa-  ( 100 )    GykQyagkgvvknekqAvktFekAçrlgSedAçgil              
d1ouva1  ( 176 )    GsLydaGrgtpkdlkkALasYdkAÇdlkdspGÇfnAGnMyhhGegatknf
                    aaaaaa       aaaaaaaaaaaaa   aaaaaa               

                             210       220       230       240       250 
d1klxa-                                                               
d1ouva1  ( 226 )    keAlarYskAÇelenggGÇfnlGaMqynGeGvtrnekqAienFkkGçklg
                                                                      

                             260   
d1klxa-                            
d1ouva1  ( 276 )    akgAçdilkqlkikv

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d1klxa- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1klxa- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Cysteine rich protein B (HcpB)	HCP-like	Helicobacter pylori [TaxId: 210]		view
d1ouva1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1ouva1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Cysteine rich protein C (HcpC)	HCP-like	Helicobacter pylori [TaxId: 210]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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Member	Chain	UniProtKB	GO term
d1klxa_	A	O25103	GO:0008800
d1klxa_	A	O25103	GO:0016787
d1klxa_	A	O25103	GO:0046677

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