PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1gxma1  ( 327 )                         tgrmltldgNpAAnwLnnArtkws-----
d1r76a-  (  25 )    avigmNeaAsaLtpsrVsslpdtqraaWqeYlarSeaqlsrDkasLaael
                                                   aaaaaaaaa          

                             60        70        80        90        100 
d1gxma1  ( 351 )    ---------------------------------asrAdvVlsyqQnnGGW
d1r76a-  (  75 )    apgqplpppPaegkgadtMpldkpaawYtskaArhVAdVIvsFQTpAGGW
                                                        aaaaaa        

                             110       120       130       140       150 
d1gxma1  ( 368 )    pknldYnsvgng-----ggg-----------ne-SGTIdngATItEMVFL
d1r76a-  ( 125 )    GknQpRdg-alrlpGqHYTgenvakvkrdRdwhyVGTIdndATvtEIrFL
                                                          333  aaaaaaa

                             160       170       180       190       200 
d1gxma1  ( 401 )    Aevyksg---gntkyrdAVrkAAnFLvnSQystGALPQfyplkggysdhA
d1r76a-  ( 183 )    AqVvsqlapeeAapYrdAAlkGIeYLLaSqFpnGGWPQVWPLeggyhDAI
                    aaaaaa      aaaaaaaaaaaaaaaaa               3333 b

                             210       220       230       240       250 
d1gxma1  ( 448 )    TFndnGMAyALTVLDFAAnkraPFdtdVFsdndrtrFktAVtkGtdYIlk
d1r76a-  ( 233 )    TYnddALVhVAeLLsdIaaGrdgFg--fVppairtrAleatnaAihCIve
                    b 333aaaaaaaaaaaaa            aaaaaaaaaaaaaaaaaaaa

                             260       270       280       290       300 
d1gxma1  ( 498 )    AQwkQngvlTVWCaQHgaldyqPkkAraYELeSLSGseSvGVLAFLMTqp
d1r76a-  ( 281 )    TQvvqdgkrlGWGQQHdAltlrPtSArnFEPaALSSTESArILlfLMeie
                    a  bb  bb     bb                 bb   aaaaaaaa    

                             310       320       330       340       350 
d1gxma1  ( 548 )    -QtaeieqAVraGVaWFnsprTylegytYdsslAatnPivpragskMWyr
d1r76a-  ( 331 )    aPsdavkqAIrgGVaWLn--tsvird--------------qga-kpLWSr
                       aaaaaaaaaaaaaa                              bb 

                             360       370       380       390       400 
d1gxma1  ( 597 )    FYdlntNrGFFSdrdgskfydItqMslerrtgysWGgnyGtsIinFAqkv
d1r76a-  ( 379 )    FYsldgnkpVFGdrdktihddvmgIsqerrtgyaWyttsPqkAlsaftkw
                    bb        bb     bb  333  aaaa     bb   aaaaaaaaa 

                        
d1gxma1  ( 647 )    g-Yl
d1r76a-  ( 429 )    ekrs

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d1gxma1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1gxma1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Polygalacturonic acid lyase (pectate lyase)	Family 10 polysaccharide lyase	Cellvibrio cellulosa [TaxId: 155077]		view
d1r76a- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1r76a- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Polygalacturonic acid lyase (pectate lyase)	Family 10 polysaccharide lyase	Azospirillum irakense [TaxId: 34011]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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A	V	I	G	M	N	E	A	A	S	A	L	T	P	S	R	V	S	S	L	P	D	T	Q	R	A	A	W	Q	E	Y	L	A	R	S	E	A	Q	L	S	R	D	K	A	S	L	A	A	E	L	A	P	G	Q	P	L	P	P	P	P	A	E	G	K	G	A	D	T	M	P	L	D	K	P	A	A	W	Y	T	S	K	A	A	R	H	V	A	D	V	I	V	S	F	Q	T	P	A	G	G	W	G	K	N	Q	P	R	D	G	-	A	L	R	L	P	G	Q	H	Y	T	G	E	N	V	A	K	V	K	R	D	R	D	W	H	Y	V	G	T	I	D	N	D	A	T	V	T	E	I	R	F	L	A	Q	V	V	S	Q	L	A	P	E	E	A	A	P	Y	R	D	A	A	L	K	G	I	E	Y	L	L	A	S	Q	F	P	N	G	G	W	P	Q	V	W	P	L	E	G	G	Y	H	D	A	I	T	Y	N	D	D	A	L	V	H	V	A	E	L	L	S	D	I	A	A	G	R	D	G	F	G	-	-	F	V	P	P	A	I	R	T	R	A	L	E	A	T	N	A	A	I	H	C	I	V	E	T	Q	V	V	Q	D	G	K	R	L	G	W	G	Q	Q	H	D	A	L	T	L	R	P	T	S	A	R	N	F	E	P	A	A	L	S	S	T	E	S	A	R	I	L	L	F	L	M	E	I	E	A	P	S	D	A	V	K	Q	A	I	R	G	G	V	A	W	L	N	-	-	T	S	V	I	R	D	-	-	-	-	-	-	-	-	-	-	-	-	-	-	Q	G	A	-	K	P	L	W	S	R	F	Y	S	L	D	G	N	K	P	V	F	G	D	R	D	K	T	I	H	D	D	V	M	G	I	S	Q	E	R	R	T	G	Y	A	W	Y	T	T	S	P	Q	K	A	L	S	A	F	T	K	W	E	K	R	S

Member	Chain	UniProtKB	GO term
d1r76a_	A	Q9X592	GO:0016829

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A	V	I	G	M	N	E	A	A	S	A	L	T	P	S	R	V	S	S	L	P	D	T	Q	R	A	A	W	Q	E	Y	L	A	R	S	E	A	Q	L	S	R	D	K	A	S	L	A	A	E	L	A	P	G	Q	P	L	P	P	P	P	A	E	G	K	G	A	D	T	M	P	L	D	K	P	A	A	W	Y	T	S	K	A	A	R	H	V	A	D	V	I	V	S	F	Q	T	P	A	G	G	W	G	K	N	Q	P	R	D	G	-	A	L	R	L	P	G	Q	H	Y	T	G	E	N	V	A	K	V	K	R	D	R	D	W	H	Y	V	G	T	I	D	N	D	A	T	V	T	E	I	R	F	L	A	Q	V	V	S	Q	L	A	P	E	E	A	A	P	Y	R	D	A	A	L	K	G	I	E	Y	L	L	A	S	Q	F	P	N	G	G	W	P	Q	V	W	P	L	E	G	G	Y	H	D	A	I	T	Y	N	D	D	A	L	V	H	V	A	E	L	L	S	D	I	A	A	G	R	D	G	F	G	-	-	F	V	P	P	A	I	R	T	R	A	L	E	A	T	N	A	A	I	H	C	I	V	E	T	Q	V	V	Q	D	G	K	R	L	G	W	G	Q	Q	H	D	A	L	T	L	R	P	T	S	A	R	N	F	E	P	A	A	L	S	S	T	E	S	A	R	I	L	L	F	L	M	E	I	E	A	P	S	D	A	V	K	Q	A	I	R	G	G	V	A	W	L	N	-	-	T	S	V	I	R	D	-	-	-	-	-	-	-	-	-	-	-	-	-	-	Q	G	A	-	K	P	L	W	S	R	F	Y	S	L	D	G	N	K	P	V	F	G	D	R	D	K	T	I	H	D	D	V	M	G	I	S	Q	E	R	R	T	G	Y	A	W	Y	T	T	S	P	Q	K	A	L	S	A	F	T	K	W	E	K	R	S

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A	V	I	G	M	N	E	A	A	S	A	L	T	P	S	R	V	S	S	L	P	D	T	Q	R	A	A	W	Q	E	Y	L	A	R	S	E	A	Q	L	S	R	D	K	A	S	L	A	A	E	L	A	P	G	Q	P	L	P	P	P	P	A	E	G	K	G	A	D	T	M	P	L	D	K	P	A	A	W	Y	T	S	K	A	A	R	H	V	A	D	V	I	V	S	F	Q	T	P	A	G	G	W	G	K	N	Q	P	R	D	G	-	A	L	R	L	P	G	Q	H	Y	T	G	E	N	V	A	K	V	K	R	D	R	D	W	H	Y	V	G	T	I	D	N	D	A	T	V	T	E	I	R	F	L	A	Q	V	V	S	Q	L	A	P	E	E	A	A	P	Y	R	D	A	A	L	K	G	I	E	Y	L	L	A	S	Q	F	P	N	G	G	W	P	Q	V	W	P	L	E	G	G	Y	H	D	A	I	T	Y	N	D	D	A	L	V	H	V	A	E	L	L	S	D	I	A	A	G	R	D	G	F	G	-	-	F	V	P	P	A	I	R	T	R	A	L	E	A	T	N	A	A	I	H	C	I	V	E	T	Q	V	V	Q	D	G	K	R	L	G	W	G	Q	Q	H	D	A	L	T	L	R	P	T	S	A	R	N	F	E	P	A	A	L	S	S	T	E	S	A	R	I	L	L	F	L	M	E	I	E	A	P	S	D	A	V	K	Q	A	I	R	G	G	V	A	W	L	N	-	-	T	S	V	I	R	D	-	-	-	-	-	-	-	-	-	-	-	-	-	-	Q	G	A	-	K	P	L	W	S	R	F	Y	S	L	D	G	N	K	P	V	F	G	D	R	D	K	T	I	H	D	D	V	M	G	I	S	Q	E	R	R	T	G	Y	A	W	Y	T	T	S	P	Q	K	A	L	S	A	F	T	K	W	E	K	R	S

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