PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1m2oa1  ( 524 )    dqeaaAVlmAriAVhkAetddgadVirwLdrtliklcqkyAdynkddpqs
d1pd0a1  ( 647 )    dqlaiAsfyNskAVekAlnsslddArvlInksvqdilatykkeivg-gap
                     aaaaaaaaaaaaaaa     aaaaaaaaaaaaaaaaaaa          

                             60        70        80        90        100 
d1m2oa1  ( 574 )    frLapnfslypqfTyyLrrsqFLsvfnnspdetafyrhiFtredttnSli
d1pd0a1  ( 701 )    lrlcanlrmFplLMhsLtkhmAFrsgiVpsdhrasaLnnLeslplkyLik
                             aaaaaaaaa           aaaaaaaaaaa    aaaaaa

                       
d1m2oa1  ( 624 )    mIq
d1pd0a1  ( 751 )    nIy
                    aa

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d1m2oa1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1m2oa1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Sec23	Helical domain of Sec23/24	Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]		view
d1pd0a1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1pd0a1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Sec24	Helical domain of Sec23/24	Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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Show entries

Search:

Member	Chain	UniProtKB	GO term
d1m2oa1	A	P15303	GO:0000139
d1m2oa1	A	P15303	GO:0003400
d1m2oa1	A	P15303	GO:0005096
d1m2oa1	A	P15303	GO:0005515
d1m2oa1	A	P15303	GO:0005737
d1m2oa1	A	P15303	GO:0005783
d1m2oa1	A	P15303	GO:0005789
d1m2oa1	A	P15303	GO:0005794
d1m2oa1	A	P15303	GO:0006886
d1m2oa1	A	P15303	GO:0006888

Showing 1 to 10 of 348 entries

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