PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d2zxea3  ( 167 )    qqalVird--gekstinaefVvagdlVeVkggdrIpADLrIisAh--gCk
d3ar4a2  ( 125 )    emgkVyradrksvqrikardIvpgdiVeVavgdkVpADIrIlsiksttLr
                     bbbbb       bbbb333     bbbbb       bbbbbbb    bb

                             60        70        80        90        100 
d2zxea3  ( 213 )    VdnssltgesepqtRspefsse---npleTrniAFfsTnCvegtArGvVv
d3ar4a2  ( 175 )    VdQsiLtgesvsviKhtepvpdpravnqdkknmLFsgTnIaagkAlGiVa
                    bb aaaa     bb                  bb    bbbb bbbbbbb

                             110   
d2zxea3  ( 260 )    ytgdrTvmgriatla
d3ar4a2  ( 225 )    ttgvsTeigkirdqm
                    b 333 aaaaaaaa

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d2zxea3 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2zxea3 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Sodium/potassium-transporting ATPase, actuator domain A	Metal cation-transporting ATPase, actuator domain A	Dogfish (Squalus acanthias) [TaxId: 7797]		view
d3ar4a2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d3ar4a2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Calcium ATPase, transduction domain A	Metal cation-transporting ATPase, actuator domain A	Rabbit (Oryctolagus cuniculus) [TaxId: 9986]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

									10										20										30										40										50										60										70										80										90										100										110
Q	Q	A	L	V	I	R	D	-	-	G	E	K	S	T	I	N	A	E	F	V	V	A	G	D	L	V	E	V	K	G	G	D	R	I	P	A	D	L	R	I	I	S	A	H	-	-	G	C	K	V	D	N	S	S	L	T	G	E	S	E	P	Q	T	R	S	P	E	F	S	S	E	-	-	-	N	P	L	E	T	R	N	I	A	F	F	S	T	N	C	V	E	G	T	A	R	G	V	V	V	Y	T	G	D	R	T	V	M	G	R	I	A	T	L	A
E	M	G	K	V	Y	R	A	D	R	K	S	V	Q	R	I	K	A	R	D	I	V	P	G	D	I	V	E	V	A	V	G	D	K	V	P	A	D	I	R	I	L	S	I	K	S	T	T	L	R	V	D	Q	S	I	L	T	G	E	S	V	S	V	I	K	H	T	E	P	V	P	D	P	R	A	V	N	Q	D	K	K	N	M	L	F	S	G	T	N	I	A	A	G	K	A	L	G	I	V	A	T	T	G	V	S	T	E	I	G	K	I	R	D	Q	M

Member	Chain	UniProtKB	GO term

									10										20										30										40										50										60										70										80										90										100										110
Q	Q	A	L	V	I	R	D	-	-	G	E	K	S	T	I	N	A	E	F	V	V	A	G	D	L	V	E	V	K	G	G	D	R	I	P	A	D	L	R	I	I	S	A	H	-	-	G	C	K	V	D	N	S	S	L	T	G	E	S	E	P	Q	T	R	S	P	E	F	S	S	E	-	-	-	N	P	L	E	T	R	N	I	A	F	F	S	T	N	C	V	E	G	T	A	R	G	V	V	V	Y	T	G	D	R	T	V	M	G	R	I	A	T	L	A
E	M	G	K	V	Y	R	A	D	R	K	S	V	Q	R	I	K	A	R	D	I	V	P	G	D	I	V	E	V	A	V	G	D	K	V	P	A	D	I	R	I	L	S	I	K	S	T	T	L	R	V	D	Q	S	I	L	T	G	E	S	V	S	V	I	K	H	T	E	P	V	P	D	P	R	A	V	N	Q	D	K	K	N	M	L	F	S	G	T	N	I	A	A	G	K	A	L	G	I	V	A	T	T	G	V	S	T	E	I	G	K	I	R	D	Q	M

									10										20										30										40										50										60										70										80										90										100										110
Q	Q	A	L	V	I	R	D	-	-	G	E	K	S	T	I	N	A	E	F	V	V	A	G	D	L	V	E	V	K	G	G	D	R	I	P	A	D	L	R	I	I	S	A	H	-	-	G	C	K	V	D	N	S	S	L	T	G	E	S	E	P	Q	T	R	S	P	E	F	S	S	E	-	-	-	N	P	L	E	T	R	N	I	A	F	F	S	T	N	C	V	E	G	T	A	R	G	V	V	V	Y	T	G	D	R	T	V	M	G	R	I	A	T	L	A
E	M	G	K	V	Y	R	A	D	R	K	S	V	Q	R	I	K	A	R	D	I	V	P	G	D	I	V	E	V	A	V	G	D	K	V	P	A	D	I	R	I	L	S	I	K	S	T	T	L	R	V	D	Q	S	I	L	T	G	E	S	V	S	V	I	K	H	T	E	P	V	P	D	P	R	A	V	N	Q	D	K	K	N	M	L	F	S	G	T	N	I	A	A	G	K	A	L	G	I	V	A	T	T	G	V	S	T	E	I	G	K	I	R	D	Q	M

									10										20										30										40										50										60										70										80										90										100										110
Q	Q	A	L	V	I	R	D	-	-	G	E	K	S	T	I	N	A	E	F	V	V	A	G	D	L	V	E	V	K	G	G	D	R	I	P	A	D	L	R	I	I	S	A	H	-	-	G	C	K	V	D	N	S	S	L	T	G	E	S	E	P	Q	T	R	S	P	E	F	S	S	E	-	-	-	N	P	L	E	T	R	N	I	A	F	F	S	T	N	C	V	E	G	T	A	R	G	V	V	V	Y	T	G	D	R	T	V	M	G	R	I	A	T	L	A
E	M	G	K	V	Y	R	A	D	R	K	S	V	Q	R	I	K	A	R	D	I	V	P	G	D	I	V	E	V	A	V	G	D	K	V	P	A	D	I	R	I	L	S	I	K	S	T	T	L	R	V	D	Q	S	I	L	T	G	E	S	V	S	V	I	K	H	T	E	P	V	P	D	P	R	A	V	N	Q	D	K	K	N	M	L	F	S	G	T	N	I	A	A	G	K	A	L	G	I	V	A	T	T	G	V	S	T	E	I	G	K	I	R	D	Q	M