PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1fs1a1  ( 109 )                          wdslpdelLlgiFsclclpeLlkvsgvc
d1nexb1  ( 270 )                 lkrdlItsl----pfeiSlkiFnylqfedIinslgvs
d1p22a1  ( 139 )                mlqrdfItalPargldhiAeniLsyldaksLcaAelvc
d2ovrb1  (2263 )    tqvkhMmqviepqfqrdfiSll----pkelAlyvLsflepkdLlqaaqtc
                                               aaaaaaaa    aaaaaaa    

                             60        70        80        90        100 
d1fs1a1  ( 137 )    krwyrlAs-desLw                                    
d1nexb1  ( 303 )    qnwnkiIrkStsLWkklLisenfvspkgfnslnlkLsqkypklsqqdrLr
d1p22a1  ( 177 )    kewyrVTsdgm-LWkkLIermvr-tdslWrglaerrgwGqyLfppNsfYr
d2ovrb1  (2309 )    rywrILAE-dnllWrekCkeegid-------eplhikrvikpgfihSpwk
                    aaaaaaa     aaaaaa                             aaa

                             110       
d1fs1a1                                
d1nexb1  ( 353 )    lsFlenIfilknwynp--k
d1p22a1  ( 234 )    alypkIiqdietiesnwrc
d2ovrb1  (2353 )    sAyirqhridtn       
                    aaaaaaaaaaa

Domains
Outliers

Domain ID	Name	Family	Source	STRING-DB
d1fs1a1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1fs1a1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Skp2	F-box domain	Human (Homo sapiens) [TaxId: 9606]	view
d1nexb1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1nexb1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Cdc4 F-box and linker domains	F-box domain	Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]	view
d1p22a1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1p22a1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	F-box/WD-repeat protein 1 (beta-TRCP1)	F-box domain	Human (Homo sapiens) [TaxId: 9606]	view
d2ovrb1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2ovrb1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	F-box/WD repeat-containing protein 7, FBXW7	F-box domain	Human (Homo sapiens) [TaxId: 9606]	view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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T	Q	V	K	H	M	M	Q	V	I	E	P	Q	F	Q	R	D	F	I	S	L	L	-	-	-	-	P	K	E	L	A	L	Y	V	L	S	F	L	E	P	K	D	L	L	Q	A	A	Q	T	C	R	Y	W	R	I	L	A	E	-	D	N	L	L	W	R	E	K	C	K	E	E	G	I	D	-	-	-	-	-	-	-	E	P	L	H	I	K	R	V	I	K	P	G	F	I	H	S	P	W	K	S	A	Y	I	R	Q	H	R	I	D	T	N	-	-	-	-	-	-	-

Member	Chain	UniProtKB	GO term

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T	Q	V	K	H	M	M	Q	V	I	E	P	Q	F	Q	R	D	F	I	S	L	L	-	-	-	-	P	K	E	L	A	L	Y	V	L	S	F	L	E	P	K	D	L	L	Q	A	A	Q	T	C	R	Y	W	R	I	L	A	E	-	D	N	L	L	W	R	E	K	C	K	E	E	G	I	D	-	-	-	-	-	-	-	E	P	L	H	I	K	R	V	I	K	P	G	F	I	H	S	P	W	K	S	A	Y	I	R	Q	H	R	I	D	T	N	-	-	-	-	-	-	-

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T	Q	V	K	H	M	M	Q	V	I	E	P	Q	F	Q	R	D	F	I	S	L	L	-	-	-	-	P	K	E	L	A	L	Y	V	L	S	F	L	E	P	K	D	L	L	Q	A	A	Q	T	C	R	Y	W	R	I	L	A	E	-	D	N	L	L	W	R	E	K	C	K	E	E	G	I	D	-	-	-	-	-	-	-	E	P	L	H	I	K	R	V	I	K	P	G	F	I	H	S	P	W	K	S	A	Y	I	R	Q	H	R	I	D	T	N	-	-	-	-	-	-	-

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