PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1ov9a-  (   2 )                         eitktllnirslrayareltieqleeald
d2l93a1  (  91 )    aarpAkySyvdengetktwtgq---------------------------g
                                                                      

                             60        70   
d1ov9a-  (  31 )    klttvvqerkeaea--------ee
d2l93a1  ( 114 )    rtpavikkAmeeqgkqledflike
                       aaaaaaaaa

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d1ov9a- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1ov9a- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	H-NS-like protein VicH	H-NS histone-like proteins	Vibrio cholerae [TaxId: 666]		view
d2l93a1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2l93a1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	H-NS histone-like proteins	Salmonella typhimurium [TaxId: 90371]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

									10										20										30										40										50										60										70
-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	E	I	T	K	T	L	L	N	I	R	S	L	R	A	Y	A	R	E	L	T	I	E	Q	L	E	E	A	L	D	K	L	T	T	V	V	Q	E	R	K	E	A	E	A	-	-	-	-	-	-	-	-	E	E
A	A	R	P	A	K	Y	S	Y	V	D	E	N	G	E	T	K	T	W	T	G	Q	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	G	R	T	P	A	V	I	K	K	A	M	E	E	Q	G	K	Q	L	E	D	F	L	I	K	E

Member	Chain	UniProtKB	GO term
d1ov9a_	A	Q9KSX6	GO:0046983
d1ov9a_	A	Q9KSX6	GO:0046983

									10										20										30										40										50										60										70
-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	E	I	T	K	T	L	L	N	I	R	S	L	R	A	Y	A	R	E	L	T	I	E	Q	L	E	E	A	L	D	K	L	T	T	V	V	Q	E	R	K	E	A	E	A	-	-	-	-	-	-	-	-	E	E
A	A	R	P	A	K	Y	S	Y	V	D	E	N	G	E	T	K	T	W	T	G	Q	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	G	R	T	P	A	V	I	K	K	A	M	E	E	Q	G	K	Q	L	E	D	F	L	I	K	E

									10										20										30										40										50										60										70
-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	E	I	T	K	T	L	L	N	I	R	S	L	R	A	Y	A	R	E	L	T	I	E	Q	L	E	E	A	L	D	K	L	T	T	V	V	Q	E	R	K	E	A	E	A	-	-	-	-	-	-	-	-	E	E
A	A	R	P	A	K	Y	S	Y	V	D	E	N	G	E	T	K	T	W	T	G	Q	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	G	R	T	P	A	V	I	K	K	A	M	E	E	Q	G	K	Q	L	E	D	F	L	I	K	E

									10										20										30										40										50										60										70
-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	E	I	T	K	T	L	L	N	I	R	S	L	R	A	Y	A	R	E	L	T	I	E	Q	L	E	E	A	L	D	K	L	T	T	V	V	Q	E	R	K	E	A	E	A	-	-	-	-	-	-	-	-	E	E
A	A	R	P	A	K	Y	S	Y	V	D	E	N	G	E	T	K	T	W	T	G	Q	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	G	R	T	P	A	V	I	K	K	A	M	E	E	Q	G	K	Q	L	E	D	F	L	I	K	E