PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1lfpa-  (   5 )    shwaqikhkkakvdaqrgklfsklireIIVATrlggpnpefNprLrtAie
d1mw7a-  (  21 )                      kvfpklakaITlaAkdggsepdtNakLrtail
d5ekza-  (  74 )                    rsrifskltlsirlavkeggpnpennsslanile
                                        aaaaaaaaaaaaa         aaaaaaaa

                             60        70        80        90        100 
d1lfpa-  (  55 )    qakkan-pwenierAikkGagelegeqfeeviyeGyApggVAV-VlATTd
d1mw7a-  (  53 )    nAkaqnMpkdnIdaAikrAs--skeGnlseityeGkanfgVlIIMeCmTd
d5ekza-  ( 108 )    lCrsknMpkstiesAlktekn-----kGiyllyeGrGPggSSllieAlSn
                    aaaa    aaaaaaaa            bbbbbbbb     bb bbbbb 

                             110       120       130       140       150 
d1lfpa-  ( 105 )    nrnrTtseVrhvFtkh-gGnLgasgcVsylFerkGyIeVpake-----Vs
d1mw7a-  ( 101 )    nptrTianLksyFnktqgAsivpngsLefmFnrkSVFeClkneVenlkls
d5ekza-  ( 153 )    sgpkChldikyilnkn-gGmmaegarh--fFdkkGvvvvgvedrekkavn
                     aaaaaaaaaaaa      bb         bbbbbbbbbb          

                             160       170       180       190       200 
d1lfpa-  ( 149 )    eeeLlekAievgAedvqpge-----eVHIIyTvpeeLyevkenLeklgVp
d1mw7a-  ( 151 )    ledLefaLidygLeeleeve-----dkIiIrGdynsfklLneGFeslkLp
d5ekza-  ( 200 )    lerAlelAieAgAedvkeaedeeeknlFkFiCdasslhqvrkkldslglc
                    aaaaaaaa      bbb         bbbbbb 333aaaaaaaaa     

                             210       220       230       240       250 
d1lfpa-  ( 194 )    IekAqiTwkpistvqIndeetAqkVikLLnaLeeldDVqqViANFeipee
d1mw7a-  ( 196 )    IlkAslqriAttpieLn-deqmelTekLldrIedddDVvaLytNie    
d5ekza-  ( 250 )    PvscsmeFiphskvqla-epeleqAahliqalnnyedvihvydnie    
                      bbbbbbbb        aaaaaaaaaaaaaaa    bbb          

                        
d1lfpa-  ( 244 )    ilqk
d1mw7a-                 
d5ekza-

Domains
Outliers

Domain ID	Name	Family	Source	STRING-DB
d1lfpa- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1lfpa- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Hypothetical protein aq1575	YebC-like	Aquifex aeolicus [TaxId: 63363]	view
d1mw7a- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1mw7a- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Hypothetical protein HP0162	YebC-like	Helicobacter pylori [TaxId: 210]	view
d5ekza- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d5ekza- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Mouse (Mus musculus) [TaxId: 10090]	view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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Member	Chain	UniProtKB	GO term
d1lfpa_	A	O67517	GO:0003677
d1lfpa_	A	O67517	GO:0005737
d1lfpa_	A	O67517	GO:0005829
d1lfpa_	A	O67517	GO:0006355
d1mw7a_	A	O24970	GO:0003677
d1mw7a_	A	O24970	GO:0005737
d1mw7a_	A	O24970	GO:0005829
d1mw7a_	A	O24970	GO:0006355

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