PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1gqea-  (   4 )    inpvnnriqdLtersdvLrgyldydakkerleeVnaeleqpdvwneperA
d1zbta1  (   2 )         niydqLqavedyeel------------------------------
                          aaaaaaaaa                                   

                             60        70        80        90        100 
d1gqea-  (  54 )    qaLgkerssleaVVdtLdqkqgledVsglLelAveaddeetfneAvaeLd
d1zbta1  (  41 )    ---------anstvavYr---eykqvvqniadaqp-----leaeelnskv
                                 aaaaa   aaaaaaaaaaaa              aaa

                             110       120       130       140       150 
d1gqea-  ( 105 )    aleeklaqlefrrFsgeyDsadCYLdIqAgsggteAqdWAs-lerYlrWA
d1zbta1  (  90 )    ake-yeekLflllpkdpnddknIiLEIrgaaggdeAalFAgdLlnYqkYA
                    a   aaaa                bbbbb    aaaaaaa          

                             160       170       180       190       200 
d1gqea-  ( 157 )    esRgFkteiIEeseGevagIksVtIkIsgdyAyGWLrTEtGvHrLvrkSp
d1zbta1  ( 143 )    -nqgwkFev-easangvgGl-eVvA-Vsg-sVyskLkyEsGaHrVqrvpv
                                         bbbb      aaaaa333 bbbbbbb   

                             210       220       230       240       250 
d1gqea-  ( 207 )    fdsggrrhtSfSsAfVYPeVdddidieinpadlridvyrasgaggqhvnr
d1zbta1  ( 192 )    tesqgrvhtStAtVlVpeveevey--eidpkdlrvdiyhak---------
                           bbbbbbbb              333bbbbbb            

                             260       270       280       290       300 
d1gqea-  ( 257 )    tesAVrithiptgivtqCqndrsqhkNkdqAkQ-kAKlyev-eqkknaek
d1zbta1  ( 241 )    vatAVrIiHlpTnikve-qeertq-qNrdkAkiirarVadhfaqiaqdeq
                       bbbbbb     bb                   aaaaaa   aaaaa 

                             310       320       330       340       350 
d1gqea-  ( 308 )    qaednksdigwgsqIRsYvlddsrIkDlrtgvetrntqaVldgsldqFIe
d1zbta1  ( 292 )    daVgt----gdrsriRTYnfpqnrVtDhrIgltlqkLdsIlsGkldeVId
                                   bbbb    bbbb     bb  aaaaa    aaaaa

                             360   
d1gqea-  ( 359 )    aSlkagl        
d1zbta1  ( 344 )    aLilydqtqkleeln
                    aaaa

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d1gqea- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1gqea- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Polypeptide chain release factor 2 (RF2)	Release factor	Escherichia coli [TaxId: 562]		view
d1zbta1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1zbta1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Streptococcus mutans [TaxId: 1309]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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Member	Chain	UniProtKB	GO term
d1gqea_	A	P07012	GO:0003747
d1gqea_	A	P07012	GO:0005737
d1gqea_	A	P07012	GO:0005829
d1gqea_	A	P07012	GO:0006412
d1gqea_	A	P07012	GO:0006415
d1gqea_	A	P07012	GO:0016149
d1gqea_	A	P07012	GO:0075523

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I	N	P	V	N	N	R	I	Q	D	L	T	E	R	S	D	V	L	R	G	Y	L	D	Y	D	A	K	K	E	R	L	E	E	V	N	A	E	L	E	Q	P	D	V	W	N	E	P	E	R	A	Q	A	L	G	K	E	R	S	S	L	E	A	V	V	D	T	L	D	Q	K	Q	G	L	E	D	V	S	G	L	L	E	L	A	V	E	A	D	D	E	E	T	F	N	E	A	V	A	E	L	D	A	L	E	E	K	L	A	Q	L	E	F	R	R	F	S	G	E	Y	D	S	A	D	C	Y	L	D	I	Q	A	G	S	G	G	T	E	A	Q	D	W	A	S	-	L	E	R	Y	L	R	W	A	E	S	R	G	F	K	T	E	I	I	E	E	S	E	G	E	V	A	G	I	K	S	V	T	I	K	I	S	G	D	Y	A	Y	G	W	L	R	T	E	T	G	V	H	R	L	V	R	K	S	P	F	D	S	G	G	R	R	H	T	S	F	S	S	A	F	V	Y	P	E	V	D	D	D	I	D	I	E	I	N	P	A	D	L	R	I	D	V	Y	R	A	S	G	A	G	G	Q	H	V	N	R	T	E	S	A	V	R	I	T	H	I	P	T	G	I	V	T	Q	C	Q	N	D	R	S	Q	H	K	N	K	D	Q	A	K	Q	-	K	A	K	L	Y	E	V	-	E	Q	K	K	N	A	E	K	Q	A	E	D	N	K	S	D	I	G	W	G	S	Q	I	R	S	Y	V	L	D	D	S	R	I	K	D	L	R	T	G	V	E	T	R	N	T	Q	A	V	L	D	G	S	L	D	Q	F	I	E	A	S	L	K	A	G	L	-	-	-	-	-	-	-	-
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