PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1kyqa2  ( 151 )    ganleigdrlqilistnglsprfGalvrdeirnlftqgdlaledavvklg
d6pr1a2  ( 114 )    psiIdrs-plmvavsaggtspvlarllreklesllpq---hlgqVaryag
                     bbbbb   bbbbb      aaaaaaaaaaaa         aaaaaaaaa

                             60        70        80        90        100 
d1kyqa2  ( 202 )    eLrrgIrllApddkdvkyrdWarrCtdlFg-----iqhchnIdvkrLldl
d6pr1a2  ( 160 )    qlrarVkkqfa------tmgerrrFwekFfvndrLaqSlanadekaVnat
                    aaaaaaaaa           aaaaaaaaa      aaa     aaaaaaa

                             110       120   
d1kyqa2  ( 248 )    FkvfqeqncslqFpprerLlseycs
d6pr1a2  ( 204 )    TerLFsepLdhr             
                    aa

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d1kyqa2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1kyqa2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Bifunctional dehydrogenase/ferrochelatase Met8p, dimerisation and C-terminal domains	Siroheme synthase middle domains-like	Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]		view
d6pr1a2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d6pr1a2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Salmonella typhimurium [TaxId: 90371]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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G	A	N	L	E	I	G	D	R	L	Q	I	L	I	S	T	N	G	L	S	P	R	F	G	A	L	V	R	D	E	I	R	N	L	F	T	Q	G	D	L	A	L	E	D	A	V	V	K	L	G	E	L	R	R	G	I	R	L	L	A	P	D	D	K	D	V	K	Y	R	D	W	A	R	R	C	T	D	L	F	G	-	-	-	-	-	I	Q	H	C	H	N	I	D	V	K	R	L	L	D	L	F	K	V	F	Q	E	Q	N	C	S	L	Q	F	P	P	R	E	R	L	L	S	E	Y	C	S
P	S	I	I	D	R	S	-	P	L	M	V	A	V	S	A	G	G	T	S	P	V	L	A	R	L	L	R	E	K	L	E	S	L	L	P	Q	-	-	-	H	L	G	Q	V	A	R	Y	A	G	Q	L	R	A	R	V	K	K	Q	F	A	-	-	-	-	-	-	T	M	G	E	R	R	R	F	W	E	K	F	F	V	N	D	R	L	A	Q	S	L	A	N	A	D	E	K	A	V	N	A	T	T	E	R	L	F	S	E	P	L	D	H	R	-	-	-	-	-	-	-	-	-	-	-	-	-

Member	Chain	UniProtKB	GO term
d1kyqa2	A	P15807	GO:0000103
d1kyqa2	A	P15807	GO:0004325
d1kyqa2	A	P15807	GO:0005575
d1kyqa2	A	P15807	GO:0006779
d1kyqa2	A	P15807	GO:0016491
d1kyqa2	A	P15807	GO:0016829
d1kyqa2	A	P15807	GO:0019354
d1kyqa2	A	P15807	GO:0043115
d1kyqa2	A	P15807	GO:0051266

									10										20										30										40										50										60										70										80										90										100										110										120
G	A	N	L	E	I	G	D	R	L	Q	I	L	I	S	T	N	G	L	S	P	R	F	G	A	L	V	R	D	E	I	R	N	L	F	T	Q	G	D	L	A	L	E	D	A	V	V	K	L	G	E	L	R	R	G	I	R	L	L	A	P	D	D	K	D	V	K	Y	R	D	W	A	R	R	C	T	D	L	F	G	-	-	-	-	-	I	Q	H	C	H	N	I	D	V	K	R	L	L	D	L	F	K	V	F	Q	E	Q	N	C	S	L	Q	F	P	P	R	E	R	L	L	S	E	Y	C	S
P	S	I	I	D	R	S	-	P	L	M	V	A	V	S	A	G	G	T	S	P	V	L	A	R	L	L	R	E	K	L	E	S	L	L	P	Q	-	-	-	H	L	G	Q	V	A	R	Y	A	G	Q	L	R	A	R	V	K	K	Q	F	A	-	-	-	-	-	-	T	M	G	E	R	R	R	F	W	E	K	F	F	V	N	D	R	L	A	Q	S	L	A	N	A	D	E	K	A	V	N	A	T	T	E	R	L	F	S	E	P	L	D	H	R	-	-	-	-	-	-	-	-	-	-	-	-	-

									10										20										30										40										50										60										70										80										90										100										110										120
G	A	N	L	E	I	G	D	R	L	Q	I	L	I	S	T	N	G	L	S	P	R	F	G	A	L	V	R	D	E	I	R	N	L	F	T	Q	G	D	L	A	L	E	D	A	V	V	K	L	G	E	L	R	R	G	I	R	L	L	A	P	D	D	K	D	V	K	Y	R	D	W	A	R	R	C	T	D	L	F	G	-	-	-	-	-	I	Q	H	C	H	N	I	D	V	K	R	L	L	D	L	F	K	V	F	Q	E	Q	N	C	S	L	Q	F	P	P	R	E	R	L	L	S	E	Y	C	S
P	S	I	I	D	R	S	-	P	L	M	V	A	V	S	A	G	G	T	S	P	V	L	A	R	L	L	R	E	K	L	E	S	L	L	P	Q	-	-	-	H	L	G	Q	V	A	R	Y	A	G	Q	L	R	A	R	V	K	K	Q	F	A	-	-	-	-	-	-	T	M	G	E	R	R	R	F	W	E	K	F	F	V	N	D	R	L	A	Q	S	L	A	N	A	D	E	K	A	V	N	A	T	T	E	R	L	F	S	E	P	L	D	H	R	-	-	-	-	-	-	-	-	-	-	-	-	-

									10										20										30										40										50										60										70										80										90										100										110										120
G	A	N	L	E	I	G	D	R	L	Q	I	L	I	S	T	N	G	L	S	P	R	F	G	A	L	V	R	D	E	I	R	N	L	F	T	Q	G	D	L	A	L	E	D	A	V	V	K	L	G	E	L	R	R	G	I	R	L	L	A	P	D	D	K	D	V	K	Y	R	D	W	A	R	R	C	T	D	L	F	G	-	-	-	-	-	I	Q	H	C	H	N	I	D	V	K	R	L	L	D	L	F	K	V	F	Q	E	Q	N	C	S	L	Q	F	P	P	R	E	R	L	L	S	E	Y	C	S
P	S	I	I	D	R	S	-	P	L	M	V	A	V	S	A	G	G	T	S	P	V	L	A	R	L	L	R	E	K	L	E	S	L	L	P	Q	-	-	-	H	L	G	Q	V	A	R	Y	A	G	Q	L	R	A	R	V	K	K	Q	F	A	-	-	-	-	-	-	T	M	G	E	R	R	R	F	W	E	K	F	F	V	N	D	R	L	A	Q	S	L	A	N	A	D	E	K	A	V	N	A	T	T	E	R	L	F	S	E	P	L	D	H	R	-	-	-	-	-	-	-	-	-	-	-	-	-